Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 4.1e-163 578.2 333 100.0
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.9e-120 436.4 326 79.1
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 1.2e-114 417.2 330 76.7
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 2.4e-110 402.9 329 74.2
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 3.6e-106 389.0 328 74.4
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.3e-104 382.5 328 64.6
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 4.4e-104 382.1 323 69.3
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 9.7e-104 380.9 333 65.2
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.3e-103 380.6 328 68.0
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 2.6e-101 372.9 326 67.8
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 5.9e-101 371.7 327 67.6
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 7.2e-99 364.8 348 60.1
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 9.4e-99 364.4 328 66.5
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 6.7e-97 358.2 326 63.8
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 8.8e-97 357.8 329 63.2
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.1e-96 357.5 328 66.2
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 4.4e-96 355.5 328 63.7
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 5.7e-96 355.1 318 66.7
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.7e-95 353.6 325 67.4
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.7e-95 353.6 335 65.4
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 2.8e-95 352.8 322 65.5
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 3.7e-95 352.4 325 64.3
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 4.8e-95 352.1 320 64.7
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 1.1e-94 350.9 348 58.3
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 4.1e-94 349.0 325 60.6
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 4.1e-94 349.0 332 63.0
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 5.3e-94 348.6 326 58.9
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 5.3e-94 348.6 325 66.5
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 7.0e-94 348.2 325 65.2
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 7.0e-94 348.2 320 63.4
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 1.2e-93 347.4 320 65.0
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 2.6e-93 346.3 317 65.9
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 2.6e-93 346.3 320 65.0
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 4.5e-93 345.5 327 65.4
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 1.0e-92 344.4 343 61.8
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 2.2e-92 343.2 327 64.5
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 2.2e-92 343.2 326 66.3
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 6.5e-92 341.7 344 62.2
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 8.5e-92 341.3 320 64.4
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.5e-91 339.7 325 63.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 2.5e-91 339.7 326 65.0
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 3.2e-91 339.3 325 63.4
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 4.2e-91 339.0 317 65.0
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 5.5e-91 338.6 326 63.8
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.2e-90 337.4 321 66.4
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 2.1e-90 336.7 322 64.0
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 2.7e-90 336.3 334 61.7
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 4.7e-90 335.5 317 65.3
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 4.7e-90 335.5 330 65.5
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 4.7e-90 335.5 325 63.4
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 8.0e-90 334.7 332 65.1
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 8.0e-90 334.7 326 63.5
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 5.2e-89 332.0 326 55.8
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.5e-88 330.5 322 62.4
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.5e-88 330.5 327 61.5
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.0e-88 330.1 323 65.6
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 3.4e-88 329.3 323 64.7
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 5.7e-88 328.6 320 61.2
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 2.2e-87 326.6 361 54.3
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 2.2e-87 326.6 317 62.5
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 4.8e-87 325.5 312 64.7
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.4e-86 323.2 321 64.2
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 3.1e-86 322.8 325 60.6
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 9.1e-86 321.2 326 63.2
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.2e-85 320.9 317 64.4
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 1.2e-85 320.9 325 63.1
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.0e-85 320.1 317 62.5
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.5e-85 318.9 323 60.7
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 7.7e-85 318.2 323 61.3
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 1.0e-84 317.8 321 63.9
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 1.7e-84 317.0 323 63.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 2.2e-84 316.6 339 48.4
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 5.0e-84 315.5 328 61.0
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 7.2e-83 311.6 325 57.2
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 3.6e-82 309.3 324 58.3
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.3e-81 306.6 322 59.6
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.3e-81 306.6 322 59.6
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 2.0e-80 303.5 328 58.5
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 3.4e-80 302.8 327 58.1
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.7e-80 302.0 330 60.9
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 2.2e-79 300.1 329 58.1
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 2.8e-79 299.7 323 59.8
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 4.8e-79 298.9 324 57.4
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 7.0e-78 295.0 319 59.9
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 7.7e-77 291.6 339 56.0
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 5.0e-76 288.9 285 64.6
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 8.6e-76 288.1 322 51.2
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.5e-75 287.3 327 45.0
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 2.3e-73 280.0 293 63.1
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 1.2e-72 277.7 321 55.5
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 2.0e-72 276.9 323 58.8
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 2.0e-72 276.9 323 58.8
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 1.1e-70 271.2 323 57.6
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 3.9e-68 262.7 324 55.9
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 2.0e-64 250.4 310 54.5
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.7e-63 247.3 231 53.7
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.3e-60 236.9 325 50.8
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 3.3e-59 233.0 165 61.8
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.8e-58 229.9 169 61.5
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 8.9e-57 224.9 203 52.7
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 2.6e-56 223.4 319 45.1
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.6e-56 223.4 321 51.1
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 2.2e-55 220.3 169 59.8
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.3e-52 211.1 262 42.4
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 4.7e-50 202.6 170 53.5
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.2e-48 198.0 209 49.3
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.5e-48 197.6 163 52.8
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 8.3e-47 191.8 159 52.8
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 4.1e-46 189.5 209 47.8
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 2.0e-40 170.6 203 38.9
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 9.9e-40 168.3 169 50.3
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.2e-38 163.3 186 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.5e-35 154.5 219 57.1
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.1e-33 146.7 169 45.0
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 9.0e-33 145.2 339 38.3
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.6e-29 134.4 247 32.8
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 5.6e-27 125.9 94 61.7
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.3e-26 124.8 171 38.6
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.1e-26 124.0 108 57.4
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 6.9e-25 119.0 79 70.9
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 5.8e-24 115.9 77 68.8
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 9.9e-24 115.2 253 47.0
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 5.4e-22 109.4 72 69.4
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.6e-21 107.8 354 28.5
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 9.0e-17 92.0 88 50.0
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 4.5e-16 89.7 59 69.5
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.1e-11 75.1 54 64.8
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 4.8e-10 69.7 47 68.1
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 2.4e-09 67.4 124 35.5
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 1.0e-07 62.0 189 28.0
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 1.1e-06 58.5 126 32.5
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 2.5e-06 57.4 57 52.6
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 9.3e-06 55.5 37 70.3


User provided reference genes

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