Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 5.8e-172 607.4 302 100.0
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 1.5e-124 449.9 303 75.2
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 5.1e-120 434.9 297 73.4
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 1.2e-100 370.5 302 63.9
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 1.0e-99 367.5 306 59.8
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 2.2e-99 366.3 306 60.1
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 9.4e-98 360.9 302 60.3
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 9.4e-98 360.9 306 59.2
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.2e-97 360.5 306 58.5
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 2.1e-97 359.8 305 58.7
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 3.6e-97 359.0 294 62.2
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 2.3e-96 356.3 305 58.0
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 1.2e-95 354.0 302 58.3
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 2.6e-95 352.8 307 56.7
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 2.6e-95 352.8 308 57.1
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 3.4e-95 352.4 305 59.0
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 3.4e-95 352.4 305 57.4
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 3.4e-95 352.4 307 56.7
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.7e-94 350.1 305 58.7
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 2.2e-94 349.7 308 56.5
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 3.7e-94 349.0 305 57.0
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.1e-93 347.4 307 58.0
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 1.4e-93 347.1 305 56.7
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 3.1e-93 345.9 308 56.2
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 2.5e-90 336.3 306 55.9
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 5.5e-90 335.1 301 54.5
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 1.6e-89 333.6 306 53.9
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.1e-89 333.2 300 57.0
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 8.0e-89 331.3 306 56.9
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 1.4e-88 330.5 298 54.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.8e-88 330.1 306 55.2
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 3.0e-88 329.3 329 52.0
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 3.0e-88 329.3 303 56.1
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 6.8e-88 328.2 301 53.8
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 8.8e-88 327.8 297 55.9
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 8.8e-88 327.8 305 53.1
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 8.8e-88 327.8 303 55.1
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.2e-87 327.4 305 55.7
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 7.5e-87 324.7 302 55.0
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 1.3e-86 323.9 302 54.6
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 1.7e-86 323.6 302 53.6
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.2e-86 323.2 302 54.3
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 2.8e-86 322.8 306 54.9
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 2.8e-86 322.8 297 55.9
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 3.7e-86 322.4 319 52.4
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 4.9e-86 322.0 304 54.9
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 3.1e-85 319.3 363 46.3
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 7.0e-85 318.2 305 52.8
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 1.2e-84 317.4 300 53.7
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 2.7e-84 316.2 297 55.9
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 2.7e-84 316.2 306 53.6
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 7.7e-84 314.7 302 51.3
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.7e-84 314.7 300 52.3
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.3e-83 313.9 301 54.8
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 2.9e-83 312.8 302 53.3
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 8.6e-83 311.2 304 52.6
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 1.1e-82 310.8 306 52.9
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.1e-82 310.8 302 53.0
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 1.5e-82 310.5 302 52.6
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 2.5e-82 309.7 302 53.0
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 3.3e-82 309.3 304 52.0
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 3.3e-82 309.3 304 52.0
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 3.3e-82 309.3 300 52.3
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 9.5e-82 307.8 304 52.6
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.2e-81 307.4 299 51.2
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.2e-81 307.4 299 51.2
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 2.8e-81 306.2 306 52.6
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 4.7e-81 305.4 302 53.3
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 1.0e-80 304.3 302 51.7
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.0e-80 304.3 309 51.5
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 1.4e-80 303.9 297 54.2
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 2.3e-80 303.1 303 51.8
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 2.3e-80 303.1 303 51.8
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 3.0e-80 302.8 301 52.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 4.0e-80 302.4 277 57.8
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 2.6e-79 299.7 302 51.7
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 2.6e-79 299.7 302 51.7
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 4.4e-79 298.9 305 50.8
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 4.4e-79 298.9 302 51.3
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 7.5e-79 298.1 302 50.0
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.7e-78 297.0 302 51.3
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 1.7e-78 297.0 303 54.1
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 6.4e-78 295.0 290 53.4
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 6.4e-78 295.0 302 50.3
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 8.3e-78 294.7 301 51.8
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.3e-75 287.3 306 50.0
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 8.6e-75 284.6 303 50.2
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 1.5e-74 283.9 299 48.5
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 3.6e-73 279.3 294 49.0
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 2.2e-70 270.0 315 44.4
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.9e-70 268.9 315 44.1
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 4.6e-68 262.3 302 46.7
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 8.6e-67 258.1 262 49.2
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 1.1e-64 251.1 268 48.5
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 8.9e-64 248.1 306 44.4
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.9e-61 240.4 210 58.1
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.1e-56 224.6 235 49.8
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 2.3e-56 223.4 302 45.0
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 6.8e-56 221.9 308 40.9
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 1.5e-55 220.7 268 45.9
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 2.5e-50 203.4 201 51.7
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 5.8e-47 192.2 195 49.7
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 5.4e-45 185.7 249 41.4
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.5e-42 176.8 188 52.7
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 4.6e-36 156.0 193 46.6
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 2.4e-32 143.7 105 61.0
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 1.2e-31 141.4 304 28.9
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 9.9e-31 138.3 213 39.0
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 2.7e-28 130.2 142 47.2
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 3.5e-28 129.8 142 46.5
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 6.0e-28 129.0 121 52.9
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 6.7e-27 125.6 142 45.8
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 5.3e-24 115.9 120 48.3
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 4.5e-23 112.8 121 47.1
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 5.8e-23 112.5 145 42.8
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 1.7e-22 110.9 120 46.7
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 3.5e-20 103.2 99 52.5
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 1.0e-19 101.7 120 42.5
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 1.1e-16 91.7 277 27.4
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 3.4e-15 86.7 67 61.2
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.0e-14 85.1 255 30.2
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 1.0e-14 85.1 66 60.6
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 4.6e-12 76.3 67 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 6.3e-09 65.9 135 33.3
Peaxi162Scf00255g00049 Petunia axillaris HOM05D006244 ORTHO05D007401 8.2e-09 65.5 82 43.9
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 8.2e-09 65.5 60 48.3


User provided reference genes

Program Settings