Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 4.7e-236 820.8 425 100.0
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 2.1e-151 539.7 403 69.7
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 3.6e-143 512.3 442 64.0
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 4.7e-143 511.9 442 64.0
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.2e-135 487.3 405 64.0
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 4.0e-126 455.7 435 59.5
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 7.2e-120 434.9 430 57.0
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.7e-113 413.7 422 54.3
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.6e-106 390.6 420 52.6
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 7.8e-106 388.3 408 51.7
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 3.8e-105 386.0 428 50.7
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 5.0e-105 385.6 424 50.0
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 5.2e-102 375.6 415 49.9
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 1.1e-99 367.9 401 50.6
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 1.4e-99 367.5 556 41.9
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 3.2e-99 366.3 573 41.0
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.4e-99 365.5 414 47.8
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 7.8e-98 361.7 423 48.2
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.6e-97 358.6 412 49.8
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.9e-96 357.1 424 47.9
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.8e-95 353.2 423 47.5
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 8.0e-95 351.7 422 49.5
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.1e-94 351.3 415 46.5
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 2.3e-94 350.1 381 51.7
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 4.0e-94 349.4 450 45.6
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 4.0e-94 349.4 404 48.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 2.0e-93 347.1 419 48.2
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 9.8e-93 344.7 363 51.8
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.2e-92 343.6 364 51.6
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.4e-91 340.9 420 46.4
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 3.2e-91 339.7 403 47.6
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 2.7e-90 336.7 424 45.8
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 2.7e-90 336.7 403 47.4
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 6.0e-90 335.5 453 44.4
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.7e-89 334.0 416 44.7
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 2.3e-89 333.6 421 45.8
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 1.1e-88 331.3 376 48.9
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 4.3e-88 329.3 430 46.5
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.6e-87 327.4 414 47.1
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 2.8e-87 326.6 414 47.1
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.1e-86 324.7 408 46.8
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 1.8e-86 323.9 424 45.3
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 3.4e-85 319.7 419 44.2
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 4.4e-85 319.3 254 65.7
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.2e-84 317.0 423 44.2
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 2.2e-84 317.0 412 44.2
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 8.3e-84 315.1 430 42.8
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.1e-83 314.7 417 45.1
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.4e-83 314.3 254 65.4
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 1.3e-81 307.8 417 41.5
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 4.3e-80 302.8 420 42.6
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 4.3e-80 302.8 404 42.8
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.8e-78 297.4 410 42.7
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 3.1e-78 296.6 422 41.9
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 2.0e-77 293.9 421 41.8
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 2.0e-77 293.9 403 44.9
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.6e-77 293.5 422 39.8
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 5.8e-77 292.4 520 36.9
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.3e-76 291.2 345 46.1
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.7e-76 290.8 426 42.0
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.2e-76 290.4 387 44.2
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 2.9e-76 290.0 429 41.3
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 4.9e-76 289.3 417 42.4
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.1e-75 288.1 416 41.6
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 2.4e-75 287.0 414 39.9
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.6e-74 284.3 401 42.6
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 8.7e-73 278.5 406 40.1
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.9e-72 277.3 378 43.7
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 9.6e-72 275.0 352 43.2
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 9.0e-70 268.5 344 44.5
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.6e-69 266.9 400 43.0
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 2.4e-67 260.4 402 39.6
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 4.2e-67 259.6 402 38.8
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 9.3e-67 258.5 395 38.7
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.2e-66 258.1 398 40.7
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.1e-66 257.3 399 39.1
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 2.1e-66 257.3 399 37.8
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 2.1e-66 257.3 404 39.4
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 4.6e-66 256.1 375 41.9
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 6.0e-66 255.8 402 38.3
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 7.8e-66 255.4 552 33.5
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 2.3e-65 253.8 406 38.2
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 6.6e-65 252.3 384 41.9
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.4e-62 243.8 409 37.4
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 7.6e-61 238.8 354 40.4
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 6.4e-60 235.7 341 37.8
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.2e-58 231.5 404 38.1
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.0e-57 228.4 414 37.4
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 8.7e-57 225.3 405 34.3
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 5.3e-54 216.1 167 62.9
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 3.2e-51 206.8 152 71.1
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 7.9e-50 202.2 412 34.5
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 3.7e-47 193.4 202 47.0
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.1e-46 191.8 287 42.9
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.3e-44 184.9 257 45.5
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 2.7e-42 177.2 416 30.0
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 5.1e-41 172.9 305 38.7
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 5.7e-40 169.5 382 35.6
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 2.8e-39 167.2 239 36.4
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.1e-38 163.7 310 37.7
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 1.5e-37 161.4 285 35.4
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.0e-37 161.0 313 37.7
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.0e-36 158.7 312 37.5
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.4e-35 154.8 146 52.1
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.9e-30 136.0 252 38.1
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 9.1e-30 135.6 246 38.6
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 8.5e-28 129.0 253 35.6
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 2.8e-23 114.0 406 25.1
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.8e-22 111.3 255 34.5
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 3.8e-20 103.6 123 51.2
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 5.5e-19 99.8 279 29.7
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 6.1e-18 96.3 84 57.1
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 5.9e-13 79.7 389 22.9
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.3e-12 78.6 123 36.6
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.3e-12 78.6 123 36.6
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 2.5e-11 74.3 63 60.3
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 5.5e-11 73.2 255 23.9
Pp3c12_25780 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.4e-09 68.6 253 20.6
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 4.0e-09 67.0 103 38.8
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.2e-09 66.6 152 36.8
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 7.0e-06 56.2 142 31.0
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 7.0e-06 56.2 136 32.4


User provided reference genes

Program Settings