Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.8e-127 457.6 238 100.0
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.5e-103 378.3 238 81.9
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.4e-96 356.7 238 77.7
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 4.1e-88 328.6 258 70.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 7.7e-87 324.3 256 69.5
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.8e-83 313.2 235 69.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 8.2e-81 304.3 233 69.5
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.4e-80 302.8 241 67.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 5.3e-80 301.6 241 67.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.0e-79 299.7 241 66.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-78 295.0 240 64.2
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.5e-78 294.7 240 64.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-77 293.5 241 66.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 5.5e-77 291.6 244 64.3
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-76 289.7 241 64.3
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.0e-74 283.1 240 67.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.6e-74 282.7 240 67.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.4e-74 282.3 240 67.1
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.4e-74 282.0 243 60.9
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.1e-72 275.4 242 61.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.3e-70 270.4 241 62.2
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.3e-70 270.4 247 59.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-70 270.4 243 60.5
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.9e-70 269.2 243 60.1
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.8e-70 268.9 241 60.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.0e-70 268.5 248 58.5
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.1e-69 267.3 243 60.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.9e-69 266.5 247 59.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.3e-69 265.8 246 61.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.2e-69 264.6 246 61.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 9.5e-69 264.2 243 57.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.8e-68 262.7 243 60.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.6e-68 262.3 243 60.1
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 8.0e-68 261.2 244 59.8
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.4e-67 260.4 241 60.6
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.4e-67 260.4 248 58.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 8.9e-67 257.7 240 59.6
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.9e-67 257.7 238 56.7
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.0e-66 256.5 241 59.3
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.0e-66 256.5 243 57.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-66 255.8 240 57.9
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.4e-66 255.4 250 55.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.4e-66 255.4 242 59.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.7e-66 255.0 242 59.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 7.5e-66 254.6 238 58.8
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 9.8e-66 254.2 242 59.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.3e-65 253.8 235 58.7
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.7e-65 253.4 246 57.3
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.2e-65 253.1 190 67.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.2e-65 253.1 240 59.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.2e-65 253.1 244 58.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.2e-65 253.1 244 57.0
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.2e-65 253.1 241 59.3
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.2e-65 253.1 241 59.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.7e-65 252.3 245 57.1
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.7e-65 252.3 245 57.1
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.9e-65 251.9 242 58.7
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 8.3e-65 251.1 241 58.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.3e-65 251.1 234 59.4
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.3e-65 251.1 248 57.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-64 250.8 249 53.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-64 250.8 240 57.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 181 69.6
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-64 250.4 242 58.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 221 62.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-64 250.0 241 58.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-64 250.0 241 58.5
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.8e-64 250.0 247 58.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.1e-64 248.8 243 58.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 4.1e-64 248.8 248 54.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.4e-64 248.4 239 58.6
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.4e-64 248.4 243 58.0
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.0e-64 248.1 252 52.8
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 7.0e-64 248.1 246 54.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 7.0e-64 248.1 241 54.4
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 9.2e-64 247.7 188 67.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.6e-63 246.9 246 54.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-63 246.5 243 57.6
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-63 246.5 243 57.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.0e-63 246.5 237 57.0
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.5e-63 245.7 178 69.7
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-63 245.7 198 62.1
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.5e-63 245.7 239 56.5
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.5e-63 245.7 252 53.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 4.5e-63 245.4 238 56.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.9e-63 245.0 236 54.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.8e-63 244.6 249 56.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 7.8e-63 244.6 249 56.2
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 7.8e-63 244.6 250 54.4
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-62 243.4 180 66.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.3e-62 243.0 238 56.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.9e-62 242.7 180 66.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.9e-62 242.7 244 55.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.8e-62 242.3 180 65.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 5.0e-62 241.9 242 55.0
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.6e-62 241.5 249 54.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.6e-62 241.5 249 54.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.6e-62 241.1 248 56.0
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 8.6e-62 241.1 239 55.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-61 240.7 178 65.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-61 240.7 244 54.5
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 5.6e-61 238.4 245 53.9
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-60 236.9 234 56.4
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.1e-60 236.5 245 53.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.1e-60 235.0 250 50.4
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 8.0e-60 234.6 175 62.9
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.8e-59 233.4 242 53.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.3e-59 233.0 252 49.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.0e-59 232.3 231 53.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.2e-59 231.9 242 55.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 6.8e-59 231.5 195 60.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.5e-58 230.3 172 65.7
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.5e-58 230.3 232 54.3
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-58 230.3 242 53.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.6e-58 229.6 178 64.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.4e-58 228.8 175 62.9
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.5e-58 228.0 163 68.7
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 6.4e-57 224.9 180 62.2
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.4e-57 224.9 243 51.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 7.0e-56 221.5 234 51.7
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.0e-55 219.9 151 70.9
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.3e-54 217.2 248 52.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 3.9e-54 215.7 232 50.0
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.6e-54 214.9 232 49.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 6.6e-54 214.9 232 50.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 9.5e-53 211.1 228 52.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.2e-52 210.7 230 51.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 3.6e-52 209.1 222 54.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.6e-52 209.1 163 61.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.6e-52 209.1 147 67.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.2e-52 208.4 163 58.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 6.8e-51 204.9 202 51.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.8e-51 204.9 172 56.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 5.8e-50 201.8 174 58.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.3e-49 200.7 172 55.2
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.1e-48 195.7 217 49.3
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.9e-46 189.1 224 49.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.6e-46 188.3 165 62.4
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-44 183.0 162 58.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.7e-44 182.2 231 45.9
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-40 169.5 132 57.6
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.9e-38 162.5 112 68.8
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.5e-37 159.8 150 60.0
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-36 156.4 147 55.1
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.8e-33 146.0 235 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.1e-29 134.4 174 40.2
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 9.6e-29 131.3 241 36.1
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.1e-28 130.2 161 42.9
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 4.7e-28 129.0 106 58.5
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.2e-28 128.6 202 36.6
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-19 101.3 76 59.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.2e-16 89.7 154 36.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 6.7e-14 82.0 86 48.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.3e-13 79.7 123 47.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-12 77.4 74 51.4
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.3e-06 57.0 53 50.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.3e-06 57.0 53 50.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 8.7e-06 55.1 57 49.1


User provided reference genes

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