Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.3e-161 572.4 342 100.0
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 6.0e-109 398.3 338 69.8
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 3.0e-108 396.0 351 66.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.7e-106 389.0 343 72.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.2e-93 347.4 337 69.7
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.1e-89 332.8 340 63.8
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 1.2e-88 330.9 343 65.0
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 5.9e-88 328.6 342 60.2
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 6.5e-87 325.1 343 64.4
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.5e-86 323.2 343 64.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 4.2e-86 322.4 343 63.3
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.1e-85 320.1 344 63.7
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.0e-84 317.8 345 62.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.3e-82 310.8 342 64.0
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.8e-82 308.9 342 64.3
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.4e-81 307.4 342 60.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.8e-81 307.0 349 63.6
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.8e-81 307.0 341 60.7
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.2e-80 304.3 338 56.8
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.3e-79 300.8 351 60.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.1e-78 297.7 352 59.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 9.4e-78 294.7 361 52.4
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.7e-77 293.1 322 63.0
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 4.7e-77 292.4 347 59.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 9.7e-75 284.6 349 58.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-74 284.3 343 54.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.7e-74 282.7 339 53.7
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.1e-73 281.2 339 61.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.8e-73 280.4 352 57.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.1e-73 279.6 341 57.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 5.3e-73 278.9 338 57.4
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.2e-72 277.7 336 56.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.6e-72 276.6 339 56.0
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.0e-71 274.6 340 52.6
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.3e-71 274.2 341 54.8
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 8.5e-71 271.6 336 55.7
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.2e-70 269.6 344 55.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 4.2e-70 269.2 420 47.6
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.7e-69 266.5 355 52.7
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.6e-69 266.2 331 60.4
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.6e-69 266.2 331 60.4
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.7e-69 265.8 331 59.8
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 6.1e-69 265.4 344 54.4
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.0e-68 264.6 347 58.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 8.8e-68 261.5 342 55.6
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.5e-67 260.8 339 51.3
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.0e-67 260.4 343 57.1
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.6e-67 260.0 305 54.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 4.4e-67 259.2 343 51.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 7.5e-67 258.5 354 49.4
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.7e-66 257.3 343 58.3
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.7e-66 257.3 344 55.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.8e-66 255.8 343 52.8
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 6.3e-66 255.4 508 43.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 2.4e-65 253.4 371 45.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.1e-65 253.1 332 58.7
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 5.3e-65 252.3 349 51.9
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.3e-65 252.3 332 53.3
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.2e-64 251.1 336 47.3
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.3e-63 247.7 303 51.2
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.2e-63 246.9 330 56.1
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.9e-63 246.5 337 54.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.8e-63 246.1 336 47.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 5.0e-63 245.7 344 51.7
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 8.5e-63 245.0 347 52.4
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.2e-62 242.7 286 61.5
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 7.2e-62 241.9 348 54.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 7.2e-62 241.9 338 46.7
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 7.2e-62 241.9 339 51.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.4e-62 241.5 336 54.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.6e-61 240.7 336 52.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.7e-61 239.2 353 48.4
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-60 237.7 341 53.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.0e-60 236.5 334 52.4
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.8e-58 229.9 319 56.1
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 3.7e-58 229.6 330 57.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 4.1e-57 226.1 334 47.3
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 9.1e-57 224.9 342 46.8
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.0e-56 223.8 334 47.0
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.0e-56 223.8 292 55.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.0e-56 223.8 337 44.5
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 2.7e-56 223.4 340 51.2
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.3e-55 220.3 326 49.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 8.6e-55 218.4 333 49.5
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.6e-53 213.0 252 57.5
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 4.7e-53 212.6 349 41.8
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.7e-53 212.6 321 50.5
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 6.8e-52 208.8 265 60.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.0e-51 207.2 331 42.9
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.4e-51 206.1 259 61.8
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 6.3e-50 202.2 334 45.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 6.3e-50 202.2 299 44.8
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.8e-49 200.7 312 49.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.7e-48 196.8 354 41.8
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.9e-47 193.4 309 49.8
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.6e-47 192.2 302 45.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 3.3e-46 189.9 344 38.7
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 7.3e-46 188.7 260 56.2
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 9.5e-46 188.3 343 39.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.8e-45 186.8 326 39.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.8e-45 186.8 343 39.1
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 8.0e-45 185.3 336 38.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 4.0e-44 183.0 347 48.4
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 8.9e-44 181.8 341 38.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-43 180.3 347 43.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-43 180.3 347 40.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 3.4e-43 179.9 330 47.3
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 4.4e-43 179.5 257 48.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.9e-41 174.1 288 44.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.2e-41 173.3 239 53.6
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.5e-40 169.9 344 37.2
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.3e-39 167.9 338 38.2
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.7e-39 167.5 305 41.0
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.7e-39 167.5 350 39.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 8.6e-39 165.2 282 45.4
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.4e-36 157.9 344 35.8
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.1e-36 156.8 343 37.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 7.5e-35 152.1 295 35.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 4.9e-34 149.4 334 35.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.1e-33 148.3 297 36.0
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.5e-32 143.3 296 37.2
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.1e-28 131.7 331 33.2
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 8.9e-28 128.6 244 40.2
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.5e-27 127.9 316 32.6
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.6e-27 127.1 118 67.8
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 4.1e-25 119.8 103 65.0
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.5e-22 110.5 132 58.3
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.5e-22 110.5 320 35.0
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 9.5e-22 108.6 320 33.4
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.4e-20 104.8 294 29.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 3.4e-19 100.1 92 62.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.4e-19 99.8 197 36.0
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.8e-19 99.4 97 58.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 9.9e-19 98.6 176 42.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.3e-18 98.2 194 34.5
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.7e-18 97.8 372 32.3
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 4.9e-18 96.3 194 42.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.2e-17 93.2 279 40.9
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 5.4e-17 92.8 102 54.9
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.0e-15 88.6 90 58.9
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.8e-13 80.5 361 29.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 5.8e-11 72.8 74 55.4
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.2e-10 70.9 115 41.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.4e-09 66.2 81 56.8
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 1.6e-08 64.7 111 40.5
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 2.1e-08 64.3 46 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 2.7e-08 63.9 374 26.7
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.3e-07 61.6 108 39.8


User provided reference genes

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