Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.8e-164 583.2 724 100.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.3e-49 201.4 519 40.8
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.1e-48 199.1 511 54.2
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.1e-47 194.9 721 48.8
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.1e-46 192.6 522 30.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 4.0e-46 190.7 498 39.6
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 4.2e-43 180.6 516 54.1
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 5.5e-43 180.3 525 43.4
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.3e-41 175.6 716 37.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 8.7e-41 172.9 523 43.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 4.8e-39 167.2 509 50.5
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.1e-38 164.1 527 51.0
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.0e-37 161.8 522 38.7
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 3.4e-37 161.0 524 46.4
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.3e-36 159.1 524 36.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.7e-36 158.7 530 37.5
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.7e-36 158.7 730 41.2
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 5.0e-36 157.1 523 35.6
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.0e-36 157.1 731 53.8
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 2.5e-35 154.8 524 55.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.2e-35 154.5 530 38.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.6e-34 152.1 698 52.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.6e-34 150.6 526 36.3
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.6e-34 150.6 523 32.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 7.9e-34 149.8 527 31.7
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.3e-33 149.1 523 45.7
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.8e-33 148.7 518 50.2
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.9e-33 147.5 190 47.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.1e-32 146.0 190 47.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.5e-32 145.6 525 52.4
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 4.3e-32 144.1 526 37.5
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.7e-32 143.7 501 39.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.6e-31 142.1 525 39.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.8e-30 138.7 501 37.7
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.8e-30 138.7 471 37.4
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-29 135.6 516 35.5
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 3.4e-29 134.4 193 46.6
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 3.4e-29 134.4 515 34.4
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.5e-29 134.0 772 42.9
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 5.9e-29 133.7 571 46.8
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 5.9e-29 133.7 524 36.3
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.0e-28 132.9 681 32.9
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-28 132.5 522 50.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.7e-28 132.1 522 46.4
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 5.0e-28 130.6 767 44.5
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.4e-27 129.0 524 45.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 4.2e-27 127.5 521 49.7
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 2.1e-26 125.2 536 41.8
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 3.6e-26 124.4 192 43.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 4.6e-26 124.0 506 36.8
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.3e-25 121.7 191 41.9
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.3e-25 121.7 522 53.3
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.0e-25 121.3 484 41.5
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.1e-25 120.6 482 39.8
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.7e-25 120.2 191 42.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 4.4e-24 117.5 480 56.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.4e-24 117.5 193 42.5
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.4e-24 116.7 566 27.2
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 9.7e-24 116.3 474 42.2
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.3e-23 115.9 517 37.1
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.3e-23 115.9 566 25.8
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.7e-23 115.5 570 26.1
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.8e-23 114.8 190 42.1
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.7e-23 114.4 142 47.9
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 4.8e-23 114.0 432 46.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 8.2e-23 113.2 506 36.4
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 8.2e-23 113.2 178 39.9
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.2e-23 113.2 183 37.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.4e-22 112.5 522 31.6
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.8e-22 112.1 530 43.0
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.1e-22 111.3 188 39.4
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 4.1e-22 110.9 191 39.8
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 9.1e-22 109.8 193 37.8
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.4e-21 107.8 177 40.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.5e-21 107.5 469 40.1
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.3e-20 105.9 358 49.2
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.3e-20 105.9 546 37.4
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.2e-20 105.1 193 37.3
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 6.5e-20 103.6 200 39.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.4e-19 102.4 611 37.5
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.9e-19 102.1 191 40.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.2e-19 101.3 523 44.2
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 5.5e-19 100.5 527 52.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 5.5e-19 100.5 192 38.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 9.4e-19 99.8 524 47.5
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 9.4e-19 99.8 468 48.5
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 2.7e-18 98.2 528 30.5
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 6.1e-18 97.1 212 34.0
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.4e-17 95.9 512 37.1
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 3.0e-17 94.7 163 36.2
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-16 92.4 192 38.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.6e-16 91.7 518 31.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 7.4e-16 90.1 527 48.0
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.3e-15 89.4 519 40.3
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.2e-15 88.6 446 33.6
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.2e-15 88.6 526 40.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.8e-15 88.2 195 37.4
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 4.8e-15 87.4 205 36.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.3e-15 87.0 194 36.1
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.4e-14 85.9 414 31.2
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 7.0e-14 83.6 176 33.5
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 7.0e-14 83.6 523 35.0
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 7.0e-14 83.6 524 46.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.6e-13 81.6 189 37.0
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 7.7e-13 80.1 528 45.5
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.2e-12 78.6 472 26.5
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 6.5e-12 77.0 527 37.2
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.5e-11 75.9 524 34.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.9e-11 75.5 474 49.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 5.5e-11 73.9 193 32.1
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 5.5e-11 73.9 193 32.1
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 5.5e-11 73.9 193 32.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.6e-10 72.4 475 39.8
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.7e-10 71.6 137 37.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.6e-10 71.2 119 40.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 4.7e-10 70.9 626 46.5
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 8.0e-10 70.1 453 51.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 8.0e-10 70.1 71 57.7
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-09 69.3 472 42.4
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-09 69.3 472 42.4
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.8e-09 68.9 162 45.7
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 6.7e-09 67.0 526 42.4
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.8e-09 66.6 178 34.3
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-08 65.9 663 31.8
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.6e-08 65.1 194 33.5
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.6e-08 65.1 151 33.1
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 4.4e-08 64.3 217 29.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.5e-08 63.5 179 29.6
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 2.8e-07 61.6 360 46.7
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 8.2e-07 60.1 193 30.6
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.4e-06 58.5 60 55.0
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 3.1e-06 58.2 129 30.2
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 9.1e-06 56.6 193 31.6


User provided reference genes

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