Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9427 Avicennia marina HOM05D004379 ORTHO05D005186 1.1e-62 243.0 117 100.0
SalBow2G2996 Salvia bowleyana HOM05D004379 ORTHO05D005186 7.0e-25 117.5 103 66.0
MSTRG.11136 Avicennia marina HOM05D004379 ORTHO05D005186 6.0e-24 114.4 108 59.3
Migut.D01070 Erythranthe guttata HOM05D004379 ORTHO05D005186 1.7e-23 112.8 115 55.7
Psat5g302160 Pisum sativum HOM05D004379 ORTHO05D005186 3.4e-19 98.6 91 52.7
Nn2g12051 Nelumbo nucifera HOM05D004379 ORTHO05D005186 2.2e-18 95.9 102 51.0
Cc04_g04300 Coffea canephora HOM05D004379 ORTHO05D005186 3.7e-18 95.1 110 51.8
TAR383G0091 Trochodendron aralioides HOM05D004379 ORTHO05D005186 6.4e-18 94.4 102 52.9
Nn8g39475 Nelumbo nucifera HOM05D004379 ORTHO05D005186 8.3e-18 94.0 102 50.0
CANSAT56G1089 Cannabis sativa HOM05D004379 ORTHO05D005186 2.4e-17 92.4 88 48.9
unitig_61.g26235 Utricularia gibba HOM05D004379 ORTHO05D005186 2.4e-17 92.4 83 50.6
Peaxi162Scf00046g00719 Petunia axillaris HOM05D004379 ORTHO05D005186 1.2e-16 90.1 94 48.9
COL.COLO4_12954 Corchorus olitorius HOM05D004379 ORTHO05D005186 2.1e-16 89.4 100 49.0
Duzib192G0219 Durio zibethinus HOM05D004379 ORTHO05D005186 2.7e-16 89.0 94 50.0
RcHm_v2.0_Chr2g0135761 Rosa chinensis HOM05D004379 ORTHO05D005186 4.6e-16 88.2 91 51.6
Manes.11G055900 Manihot esculenta HOM05D004379 ORTHO05D005186 6.0e-16 87.8 107 44.9
FvH4_6g29870 Fragaria vesca HOM05D004379 ORTHO05D005186 1.0e-15 87.0 102 50.0
FAN14G0452 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.0e-15 87.0 102 50.0
Hma1.2p1_0042F.1_g025560 Hydrangea macrophylla HOM05D004379 ORTHO05D005186 1.3e-15 86.7 59 71.2
Potri.018G130700 Populus trichocarpa HOM05D004379 ORTHO05D005186 1.3e-15 86.7 104 46.2
Rhsim08G0213700 Rhododendron simsii HOM05D004379 ORTHO05D005186 1.3e-15 86.7 94 51.1
CSS0024700 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 1.7e-15 86.3 95 51.6
FAN02G0226 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.7e-15 86.3 102 50.0
FAN17G1709 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.7e-15 86.3 102 50.0
Phvul.010G155400 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 1.7e-15 86.3 98 50.0
Prupe.3G085300 Prunus persica HOM05D004379 ORTHO05D005186 1.7e-15 86.3 88 53.4
FAN05G0070 Fragaria x ananassa HOM05D004379 ORTHO05D005186 2.3e-15 85.9 102 50.0
Cfa003389 Carpinus fangiana HOM05D004379 ORTHO05D005186 3.0e-15 85.5 103 51.5
Migut.I00774 Erythranthe guttata HOM05D004379 ORTHO05D005186 3.0e-15 85.5 92 52.2
arahy.Tifrunner.gnm1.ann1.4DH38B Arachis hypogaea HOM05D004379 ORTHO05D005186 3.9e-15 85.1 99 44.4
arahy.Tifrunner.gnm1.ann1.4K2N5B Arachis hypogaea HOM05D004379 ORTHO05D005186 3.9e-15 85.1 99 44.4
Haze_25560 Corylus avellana HOM05D004379 ORTHO05D005186 3.9e-15 85.1 103 49.5
FAN23G1202 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.9e-15 85.1 98 50.0
FAN23G2903 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.9e-15 85.1 98 50.0
FAN26G3437 Fragaria x ananassa HOM05D004379 ORTHO05D005186 3.9e-15 85.1 98 50.0
Duzib235G0719 Durio zibethinus HOM05D004379 ORTHO05D005186 5.1e-15 84.7 104 49.0
FAN28G1543 Fragaria x ananassa HOM05D004379 ORTHO05D005186 5.1e-15 84.7 98 49.0
MBI01_g38638_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 5.1e-15 84.7 90 52.2
Atru.chr1.2986 Acer truncatum HOM05D004379 ORTHO05D005186 6.6e-15 84.3 109 48.6
Aqoxy7G03687 Aquilegia oxysepala HOM05D004379 ORTHO05D005186 6.6e-15 84.3 89 50.6
CSS0000383 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 6.6e-15 84.3 56 69.6
Ciclev10027032m.g Citrus clementina HOM05D004379 ORTHO05D005186 6.6e-15 84.3 92 48.9
FvH4_1g03100 Fragaria vesca HOM05D004379 ORTHO05D005186 6.6e-15 84.3 98 49.0
VMungo0331G0688 Vigna mungo HOM05D004379 ORTHO05D005186 6.6e-15 84.3 93 44.1
Glyma.07G030700 Glycine max HOM05D004379 ORTHO05D005186 8.6e-15 84.0 93 46.2
QL02p088712 Quercus lobata HOM05D004379 ORTHO05D005186 8.6e-15 84.0 105 45.7
Sabra06G0050900 Salix brachista HOM05D004379 ORTHO05D005186 1.1e-14 83.6 94 46.8
unitig_0.g1118 Utricularia gibba HOM05D004379 ORTHO05D005186 1.1e-14 83.6 95 49.5
FAN09G2661 Fragaria x ananassa HOM05D004379 ORTHO05D005186 1.5e-14 83.2 99 49.5
Glyma.08G212100 Glycine max HOM05D004379 ORTHO05D005186 1.5e-14 83.2 94 45.7
QL05p029537 Quercus lobata HOM05D004379 ORTHO05D005186 1.5e-14 83.2 97 47.4
Solyc07g008205.1 Solanum lycopersicum HOM05D004379 ORTHO05D005186 1.5e-14 83.2 88 48.9
HanXRQChr12g0361431 Helianthus annuus HOM05D004379 ORTHO05D005186 1.9e-14 82.8 61 63.9
Lj3g0013777 Lotus japonicus HOM05D004379 ORTHO05D005186 1.9e-14 82.8 97 48.5
Actinidia08802 Actinidia chinensis HOM05D004379 ORTHO05D005186 2.5e-14 82.4 99 48.5
CiPaw.04G172300 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.3e-14 82.0 104 49.0
Rhsim12G0191800 Rhododendron simsii HOM05D004379 ORTHO05D005186 3.3e-14 82.0 98 51.0
Thecc.06G022000 Theobroma cacao HOM05D004379 ORTHO05D005186 3.3e-14 82.0 105 50.5
Glyma.15G008000 Glycine max HOM05D004379 ORTHO05D005186 4.3e-14 81.6 87 47.1
Thecc.09G128000 Theobroma cacao HOM05D004379 ORTHO05D005186 4.3e-14 81.6 104 45.2
Glyma.17G113800 Glycine max HOM05D004379 ORTHO05D005186 5.6e-14 81.3 96 49.0
MD17G1210000 Malus domestica HOM05D004379 ORTHO05D005186 5.6e-14 81.3 88 53.4
Hund06564 Selenicereus undatus HOM05D004379 ORTHO05D005186 5.6e-14 81.3 65 61.5
Duzib187G0465 Durio zibethinus HOM05D004379 ORTHO05D005186 7.3e-14 80.9 103 45.6
Phvul.003G165600 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 9.5e-14 80.5 98 46.9
Gohir.D10G075800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.2e-13 80.1 103 46.6
Gorai.011G083500 Gossypium raimondii HOM05D004379 ORTHO05D005186 1.2e-13 80.1 103 46.6
Lsat_1_v5_gn_5_132021 Lactuca sativa HOM05D004379 ORTHO05D005186 1.2e-13 80.1 95 46.3
Medtr2g103780 Medicago truncatula HOM05D004379 ORTHO05D005186 1.2e-13 80.1 94 45.7
Gohir.D05G016800 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.6e-13 79.7 104 47.1
Gorai.009G017000 Gossypium raimondii HOM05D004379 ORTHO05D005186 1.6e-13 79.7 104 47.1
HanXRQChr06g0169201 Helianthus annuus HOM05D004379 ORTHO05D005186 1.6e-13 79.7 92 45.7
Nitab4.5_0007793g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.6e-13 79.7 103 44.7
RcHm_v2.0_Chr2g0088241 Rosa chinensis HOM05D004379 ORTHO05D005186 1.6e-13 79.7 97 46.4
CiPaw.02G156500 Carya illinoinensis HOM05D004379 ORTHO05D005186 2.1e-13 79.3 98 45.9
CsaV3_4G001570 Cucumis sativus L. HOM05D004379 ORTHO05D005186 2.8e-13 79.0 102 46.1
Actinidia15991 Actinidia chinensis HOM05D004379 ORTHO05D005186 3.6e-13 78.6 55 65.5
Lalb_Chr07g0179021 Lupinus albus HOM05D004379 ORTHO05D005186 3.6e-13 78.6 96 43.8
PSO724G0030 Papaver somniferum HOM05D004379 ORTHO05D005186 3.6e-13 78.6 110 46.4
PGSC0003DMG400030926 Solanum tuberosum HOM05D004379 ORTHO05D005186 3.6e-13 78.6 88 45.5
VMungo1215G1478 Vigna mungo HOM05D004379 ORTHO05D005186 3.6e-13 78.6 98 45.9
Gohir.A05G015700 Gossypium hirsutum HOM05D004379 ORTHO05D005186 4.7e-13 78.2 104 46.2
MD02G1030200 Malus domestica HOM05D004379 ORTHO05D005186 4.7e-13 78.2 107 47.7
Phvul.005G177700 Phaseolus vulgaris HOM05D004379 ORTHO05D005186 4.7e-13 78.2 93 44.1
Manes.14G121900 Manihot esculenta HOM05D004379 ORTHO05D005186 6.2e-13 77.8 95 47.4
arahy.Tifrunner.gnm1.ann1.131LTR Arachis hypogaea HOM05D004379 ORTHO05D005186 8.1e-13 77.4 90 47.8
Lalb_Chr13g0301791 Lupinus albus HOM05D004379 ORTHO05D005186 8.1e-13 77.4 94 43.6
Nitab4.5_0007034g0030 Nicotiana tabacum HOM05D001011 ORTHO05D000851 8.1e-13 77.4 62 54.8
Psat7g256400 Pisum sativum HOM05D004379 ORTHO05D005186 8.1e-13 77.4 98 45.9
Sabra18G0111000 Salix brachista HOM05D001818 ORTHO05D001780 8.1e-13 77.4 90 47.8
MELO3C029250.2 Cucumis melo HOM05D004379 ORTHO05D005186 1.1e-12 77.0 114 43.0
Gohir.A10G074000 Gossypium hirsutum HOM05D004379 ORTHO05D005186 1.1e-12 77.0 103 45.6
MBI04_g29349_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 1.1e-12 77.0 68 50.0
PSO135G0759 Papaver somniferum HOM05D004379 ORTHO05D005186 1.4e-12 76.6 113 44.2
CsaV3_7G032450 Cucumis sativus L. HOM05D004379 ORTHO05D005186 1.8e-12 76.3 110 40.9
ECA232G5025 Erigeron canadensis HOM05D000315 ORTHO05D001379 1.8e-12 76.3 58 60.3
Medtr4g114660 Medicago truncatula HOM05D004379 ORTHO05D005186 2.3e-12 75.9 97 44.3
SalBow6G6427 Salvia bowleyana HOM05D004379 ORTHO05D005186 2.3e-12 75.9 57 63.2
Cpa.g.sc10.259 Carica papaya HOM05D004379 ORTHO05D005186 3.1e-12 75.5 90 45.6
Medtr4g010300 Medicago truncatula HOM05D004379 ORTHO05D005186 3.1e-12 75.5 97 42.3
TPR.G26481 Trifolium pratense HOM05D004379 ORTHO05D005186 3.1e-12 75.5 99 40.4
MBI04_g47848_MAGBIO Magnolia biondii HOM05D004379 ORTHO05D005186 4.0e-12 75.1 68 50.0
Sed0025536 Sechium edule HOM05D004379 ORTHO05D005186 4.0e-12 75.1 95 44.2
arahy.Tifrunner.gnm1.ann1.WW0PRH Arachis hypogaea HOM05D004379 ORTHO05D005186 5.2e-12 74.7 59 57.6
Lj4g0010177 Lotus japonicus HOM05D004379 ORTHO05D005186 5.2e-12 74.7 92 42.4
Lalb_Chr22g0350861 Lupinus albus HOM05D004379 ORTHO05D005186 5.2e-12 74.7 95 47.4
EL10Ac9g21909 Beta vulgaris HOM05D004379 ORTHO05D005186 6.8e-12 74.3 107 41.1
unitig_744.g24019 Utricularia gibba HOM05D004379 ORTHO05D005186 6.8e-12 74.3 87 43.7
MELO3C017882.2 Cucumis melo HOM05D004379 ORTHO05D005186 8.9e-12 73.9 106 41.5
Atru.chr7.1137 Acer truncatum HOM05D004379 ORTHO05D005186 1.2e-11 73.6 72 50.0
ClCG07G012630 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.5e-11 73.2 99 41.4
ClCG09G002880 Citrullus lanatus HOM05D004379 ORTHO05D005186 1.5e-11 73.2 108 42.6
MD15G1171700 Malus domestica HOM05D004379 ORTHO05D005186 1.5e-11 73.2 58 56.9
CSS0018376 Camellia sinensis var. sinensis HOM05D004379 ORTHO05D005186 2.0e-11 72.8 94 46.8
PGR102G3274 Punica granatum HOM05D004379 ORTHO05D005186 2.0e-11 72.8 98 39.8
AUR62016345 Chenopodium quinoa HOM05D004379 ORTHO05D005186 2.6e-11 72.4 62 56.5
DCAR_025508 Daucus carota HOM05D004379 ORTHO05D005186 2.6e-11 72.4 67 52.2
Duzib168G0259 Durio zibethinus HOM05D004379 ORTHO05D005186 2.6e-11 72.4 102 42.2
CiPaw.03G245200 Carya illinoinensis HOM05D004379 ORTHO05D005186 3.4e-11 72.0 103 45.6
TPR.G38692 Trifolium pratense HOM05D004379 ORTHO05D005186 5.8e-11 71.2 89 42.7
Eucgr.C01743 Eucalyptus grandis HOM05D004379 ORTHO05D005186 7.5e-11 70.9 89 46.1
Eucgr.L02713 Eucalyptus grandis HOM05D004379 ORTHO05D005186 9.9e-11 70.5 112 43.8
Sed0018633 Sechium edule HOM05D004379 ORTHO05D005186 1.3e-10 70.1 82 45.1
TPR.G37291 Trifolium pratense HOM05D004379 ORTHO05D005186 2.2e-10 69.3 62 53.2
Sed0013123 Sechium edule HOM05D004379 ORTHO05D005186 2.9e-10 68.9 86 40.7
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 3.7e-10 68.6 94 38.3
Prupe.7G036700 Prunus persica HOM05D004379 ORTHO05D005186 4.9e-10 68.2 90 42.2
Sed0016032 Sechium edule HOM05D004379 ORTHO05D005186 4.9e-10 68.2 95 40.0
Sed0020577 Sechium edule HOM05D004379 ORTHO05D005186 4.9e-10 68.2 119 38.7
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 8.3e-10 67.4 104 35.6
Prupe.7G244400 Prunus persica HOM05D004379 ORTHO05D005186 8.3e-10 67.4 109 39.4
COL.COLO4_18855 Corchorus olitorius HOM05D004379 ORTHO05D005186 1.4e-09 66.6 101 44.6
Nitab4.5_0000209g0140 Nicotiana tabacum HOM05D004379 ORTHO05D005186 1.9e-09 66.2 55 52.7
Eucgr.F03867 Eucalyptus grandis HOM05D004379 ORTHO05D005186 2.4e-09 65.9 112 42.0
Sed0015199 Sechium edule HOM05D004379 ORTHO05D005186 2.4e-09 65.9 82 42.7
Thecc.09G025200 Theobroma cacao HOM05D004379 ORTHO05D005186 2.4e-09 65.9 89 43.8
TWI75G1822 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 5.4e-09 64.7 75 52.0
CsaV3_1G030270 Cucumis sativus L. HOM05D004379 ORTHO05D005186 9.2e-09 63.9 67 46.3
Solyc03g116650.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 9.2e-09 63.9 59 47.5
Ciclev10010462m.g Citrus clementina HOM05D004379 ORTHO05D005186 1.2e-08 63.5 60 50.0
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 1.6e-08 63.2 103 36.9
Lalb_Chr12g0197991 Lupinus albus HOM05D004379 ORTHO05D005186 1.6e-08 63.2 58 50.0
Ciclev10010639m.g Citrus clementina HOM05D004379 ORTHO05D005186 3.5e-08 62.0 63 46.0
Peaxi162Scf00332g00733 Petunia axillaris HOM05D004379 ORTHO05D005186 3.5e-08 62.0 70 47.1
SEGI_35416 Sequoiadendron giganteum HOM05D004379 ORTHO05D005186 4.6e-08 61.6 99 34.3
arahy.Tifrunner.gnm1.ann1.YHK00Y Arachis hypogaea HOM05D004379 ORTHO05D005186 7.8e-08 60.8 62 48.4
ClCG06G011240 Citrullus lanatus HOM05D004379 ORTHO05D005186 3.0e-07 58.9 67 46.3
Lalb_Chr04g0262391 Lupinus albus HOM05D004379 ORTHO05D005186 3.0e-07 58.9 60 46.7
Solyc08g015940.3 Solanum lycopersicum HOM05D004379 ORTHO05D005186 3.9e-07 58.5 56 51.8
Sopen07g004100 Solanum pennellii HOM05D054783 ORTHO05D051282 3.9e-07 58.5 57 49.1
Sopen08g006200 Solanum pennellii HOM05D004379 ORTHO05D005186 3.9e-07 58.5 56 51.8
Psat4g038120 Pisum sativum HOM05D018984 ORTHO05D020974 6.6e-07 57.8 44 59.1
TWI12G0794 Tripterygium wilfordii HOM05D004379 ORTHO05D005186 8.6e-07 57.4 102 36.3
PSO339G4098 Papaver somniferum HOM05D004379 ORTHO05D005186 1.9e-06 56.2 106 35.8
Nitab4.5_0001597g0040 Nicotiana tabacum HOM05D004379 ORTHO05D005186 2.5e-06 55.8 56 46.4


User provided reference genes

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