Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 4.1e-60 234.6 121 100.0
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 9.5e-41 170.2 117 75.2
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 5.2e-39 164.5 117 69.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.2e-38 163.3 117 68.4
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 4.5e-35 151.4 116 66.4
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 8.6e-34 147.1 117 66.7
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 9.5e-33 143.7 117 61.5
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.1e-32 142.5 117 68.4
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 6.1e-32 141.0 117 63.2
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.0e-31 140.2 117 62.4
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 2.3e-31 139.0 117 65.0
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.6e-30 135.6 114 60.5
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 2.2e-29 132.5 117 60.7
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 8.3e-29 130.6 117 55.6
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 4.1e-28 128.3 117 57.3
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 5.4e-28 127.9 117 55.6
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.2e-27 126.7 109 57.8
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 5.9e-27 124.4 105 59.0
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.1e-25 120.2 114 57.0
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.1e-25 120.2 114 57.0
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.5e-25 119.8 112 57.1
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.5e-25 119.8 117 57.3
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.9e-25 119.4 95 60.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.9e-25 119.4 112 51.8
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 2.5e-25 119.0 119 53.8
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 2.5e-25 119.0 106 60.4
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.3e-25 118.6 100 59.0
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 3.3e-25 118.6 110 58.2
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 4.3e-25 118.2 92 63.0
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 5.6e-25 117.9 108 57.4
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 5.6e-25 117.9 94 62.8
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 9.5e-25 117.1 104 62.5
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.2e-24 116.7 112 56.2
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.2e-24 116.7 110 54.5
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 1.6e-24 116.3 100 58.0
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 1.6e-24 116.3 103 59.2
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.1e-24 115.9 97 59.8
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.8e-24 115.5 95 58.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.2e-24 114.4 95 57.9
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.0e-24 114.0 95 57.9
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.0e-23 113.6 95 56.8
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.4e-23 113.2 105 57.1
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.8e-23 112.8 99 56.6
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.8e-23 112.8 94 61.7
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.8e-23 112.8 110 56.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 2.3e-23 112.5 117 47.9
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 3.1e-23 112.1 99 56.6
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 8.9e-23 110.5 97 56.7
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 8.9e-23 110.5 103 56.3
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 8.9e-23 110.5 88 60.2
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.2e-22 110.2 105 57.1
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.2e-22 110.2 93 61.3
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.5e-22 109.8 91 61.5
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.0e-22 109.4 94 56.4
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.0e-22 109.4 108 51.9
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.6e-22 109.0 114 53.5
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.4e-22 108.6 101 56.4
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 4.4e-22 108.2 100 55.0
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 5.8e-22 107.8 91 60.4
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 7.5e-22 107.5 94 56.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.7e-21 106.3 109 49.5
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.9e-21 105.5 105 55.2
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.7e-21 105.1 104 49.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 1.1e-20 103.6 95 60.0
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.1e-20 103.6 94 54.3
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.4e-20 103.2 94 54.3
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 3.2e-20 102.1 106 49.1
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 4.1e-20 101.7 103 47.6
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 5.4e-20 101.3 96 57.3
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 7.0e-20 100.9 92 56.5
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 9.2e-20 100.5 103 47.6
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 1.2e-19 100.1 100 49.0
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 2.0e-19 99.4 98 52.0
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 2.7e-19 99.0 106 51.9
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 6.0e-19 97.8 105 46.7
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-18 97.1 96 50.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.9e-18 95.1 121 46.3
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 1.9e-17 92.8 99 48.5
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.3e-17 91.7 101 44.6
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 3.6e-16 88.6 113 46.9
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.8e-15 86.3 86 55.8
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.1e-15 85.5 67 67.2
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.2e-15 84.7 113 39.8
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 4.4e-14 81.6 89 46.1
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 4.9e-13 78.2 65 56.9
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.4e-12 76.6 86 46.5
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 7.8e-11 70.9 88 45.5
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.2e-08 63.5 74 52.7
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 2.1e-08 62.8 74 50.0
Hma1.2p1_1595F.1_g292725 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.5e-06 56.6 55 61.8


User provided reference genes

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