Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 6.8e-111 404.1 211 100.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.6e-72 276.6 221 70.1
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.6e-70 269.2 224 68.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.7e-69 266.5 206 70.9
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 4.9e-69 265.0 221 66.5
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 9.3e-68 260.8 212 70.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.7e-66 256.5 202 70.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 6.6e-66 254.6 264 59.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.3e-65 252.3 214 65.0
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.3e-65 252.3 232 62.9
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 5.6e-65 251.5 214 65.4
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 4.8e-64 248.4 201 68.7
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 8.1e-64 247.7 197 68.0
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.1e-64 247.7 197 69.0
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.1e-63 245.7 210 65.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.1e-63 245.7 195 67.7
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.0e-63 245.4 192 68.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.0e-63 245.4 210 65.7
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 5.3e-63 245.0 200 66.5
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 5.3e-63 245.0 201 67.2
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 6.9e-63 244.6 196 70.9
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 6.9e-63 244.6 201 67.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 6.9e-63 244.6 199 69.3
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.9e-63 244.6 201 67.7
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 9.0e-63 244.2 210 66.2
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.2e-62 243.8 196 65.3
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.2e-62 243.8 195 68.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.0e-62 243.0 199 66.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.0e-62 243.0 194 70.6
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.4e-62 242.3 216 64.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.8e-62 241.5 208 65.4
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.9e-62 240.7 197 66.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 9.9e-62 240.7 210 63.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 9.9e-62 240.7 195 67.2
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.3e-61 240.4 207 65.2
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.2e-61 239.6 206 64.1
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 4.9e-61 238.4 201 65.2
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 8.4e-61 237.7 200 65.0
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.1e-60 237.3 203 64.5
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.4e-60 236.9 199 64.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.9e-60 236.5 205 64.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.4e-60 236.1 198 67.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.2e-60 235.7 205 62.9
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 4.2e-60 235.3 197 63.5
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 5.4e-60 235.0 205 64.4
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 9.3e-60 234.2 205 62.4
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.3e-60 234.2 205 64.4
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.6e-59 233.4 213 63.4
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.1e-59 233.0 210 63.8
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.1e-59 233.0 209 63.6
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.5e-59 232.3 189 66.1
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.6e-59 231.9 196 66.3
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 7.9e-59 231.1 212 61.8
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.0e-58 230.7 207 62.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.3e-58 230.3 178 72.5
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 2.3e-58 229.6 197 65.0
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.3e-58 229.6 202 64.4
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.9e-58 228.8 217 60.4
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 5.1e-58 228.4 201 64.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 5.1e-58 228.4 193 65.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 5.1e-58 228.4 198 62.1
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 5.1e-58 228.4 198 61.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 6.7e-58 228.0 195 63.6
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 6.7e-58 228.0 206 61.7
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.5e-57 226.9 200 62.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.9e-57 226.5 203 64.0
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.9e-57 226.5 203 64.0
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.9e-57 226.5 206 61.2
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.5e-57 226.1 198 63.6
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.5e-57 226.1 202 65.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.3e-57 225.7 199 63.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 3.3e-57 225.7 199 63.8
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.3e-57 225.7 204 59.8
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 5.6e-57 224.9 164 71.3
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 7.4e-57 224.6 209 61.2
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 7.4e-57 224.6 197 62.4
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 7.4e-57 224.6 209 61.2
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 7.4e-57 224.6 195 64.6
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 9.6e-57 224.2 207 62.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 9.6e-57 224.2 201 62.7
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.3e-56 223.8 212 60.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.3e-56 223.8 198 62.6
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.3e-56 223.8 202 64.9
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.6e-56 223.4 198 64.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.6e-56 223.4 202 62.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.6e-56 223.4 133 84.2
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.8e-56 222.6 165 71.5
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.7e-56 222.2 187 65.2
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.7e-56 222.2 157 77.7
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 4.8e-56 221.9 145 76.6
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.8e-56 221.9 195 61.5
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 6.2e-56 221.5 212 59.9
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 6.2e-56 221.5 204 59.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 8.1e-56 221.1 134 82.1
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.1e-55 220.7 203 62.1
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.1e-55 220.7 156 73.7
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.4e-55 220.3 182 66.5
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.1e-55 219.2 160 71.9
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 6.9e-55 218.0 212 59.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.9e-55 218.0 188 65.4
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 9.0e-55 217.6 189 62.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 9.0e-55 217.6 207 59.9
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.2e-54 217.2 176 67.6
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.5e-54 216.9 169 66.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 5.8e-54 214.9 191 62.8
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.7e-53 213.4 137 78.1
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 8.4e-53 211.1 159 71.1
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.9e-52 209.9 163 68.7
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.5e-52 209.5 159 70.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.5e-52 209.5 160 68.8
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.2e-52 209.1 175 65.7
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.8e-50 203.4 201 58.2
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.5e-49 199.5 140 73.6
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.5e-49 199.5 202 56.9
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.6e-48 196.8 193 60.6
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 5.3e-47 191.8 199 53.8
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 5.8e-46 188.3 141 70.2
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.0e-45 187.6 134 71.6
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 5.0e-45 185.3 199 55.8
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 6.5e-45 184.9 199 56.3
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 6.7e-42 174.9 136 64.7
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.5e-41 173.7 132 68.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 4.3e-41 172.2 133 67.7
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.4e-39 167.2 138 66.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.2e-38 164.1 206 50.5
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.0e-38 163.3 136 64.7
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.3e-34 149.8 118 65.3
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.4e-31 139.8 198 47.0
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 6.9e-31 138.3 151 56.3
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 8.5e-29 131.3 143 55.9
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.2e-27 127.5 204 45.6
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.1e-27 125.2 71 87.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 8.8e-26 121.3 79 78.5
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 5.0e-21 105.5 63 82.5
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 5.0e-21 105.5 63 82.5
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 3.3e-17 92.8 81 65.4
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.4e-17 92.4 63 73.0
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.0e-10 71.2 135 43.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.2e-09 67.8 45 75.6


User provided reference genes

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