Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.1e-173 613.2 307 100.0
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 8.3e-150 533.9 307 86.3
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.3e-142 510.0 307 81.8
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.2e-142 509.2 306 82.7
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 4.9e-142 508.1 305 82.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 9.2e-141 503.8 308 83.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 5.9e-140 501.1 307 81.8
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 4.7e-137 491.5 310 80.6
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 8.9e-136 487.3 307 79.2
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.2e-135 486.9 307 79.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.7e-134 483.0 307 79.2
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.9e-134 482.3 308 76.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.2e-133 477.2 267 86.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-132 476.1 307 78.5
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.5e-132 475.3 273 85.3
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 4.6e-132 474.9 307 77.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.0e-131 473.8 307 77.5
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.0e-131 473.8 303 77.2
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.7e-131 473.0 317 76.3
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.3e-131 472.6 303 78.2
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.0e-131 472.2 303 78.2
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 5.0e-131 471.5 311 78.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 5.0e-131 471.5 302 77.5
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 6.6e-131 471.1 311 76.8
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.5e-130 469.9 303 77.9
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 4.3e-130 468.4 280 80.7
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 7.3e-130 467.6 308 76.6
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 9.5e-130 467.2 269 83.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.2e-129 466.8 273 83.5
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.2e-129 466.8 299 78.3
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.6e-129 466.5 309 76.1
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.1e-129 466.1 280 83.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 2.8e-129 465.7 308 76.0
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 4.7e-129 464.9 266 85.0
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 6.2e-129 464.5 307 76.2
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 6.2e-129 464.5 307 75.6
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.0e-128 463.8 307 76.2
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.4e-128 463.4 300 76.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.4e-128 463.4 307 75.2
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.8e-128 463.0 302 77.5
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 5.2e-128 461.5 306 75.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 8.9e-128 460.7 309 76.7
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 8.9e-128 460.7 272 81.2
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.2e-127 460.3 309 73.5
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.5e-127 459.9 279 78.5
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-127 459.5 305 74.4
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.0e-127 459.5 299 76.3
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 4.4e-127 458.4 282 80.1
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 4.4e-127 458.4 309 72.8
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 4.4e-127 458.4 299 74.9
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 5.8e-127 458.0 309 72.8
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.7e-126 456.4 278 77.7
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.2e-126 456.1 270 79.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 2.2e-126 456.1 309 72.8
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 2.2e-126 456.1 307 74.6
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 2.9e-126 455.7 309 72.8
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 6.4e-126 454.5 281 76.9
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.1e-125 453.8 311 74.0
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.1e-125 453.8 309 73.8
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.9e-125 453.0 265 82.6
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.9e-125 453.0 309 72.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.4e-125 451.4 309 71.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.4e-125 451.4 309 71.5
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.2e-124 450.3 287 78.0
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.6e-124 449.9 262 83.2
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.0e-124 449.5 308 75.0
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 4.6e-124 448.4 254 85.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 6.0e-124 448.0 272 80.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 7.8e-124 447.6 243 88.9
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 7.8e-124 447.6 243 88.9
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.0e-123 447.2 306 72.5
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.0e-123 447.2 265 80.8
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-122 443.7 312 73.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.6e-121 439.9 275 78.9
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 2.8e-121 439.1 243 86.8
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 4.7e-121 438.3 270 78.1
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 4.7e-121 438.3 268 78.7
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 6.2e-121 438.0 310 71.3
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.8e-120 434.5 301 72.4
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 6.8e-120 434.5 273 76.6
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 8.9e-120 434.1 301 72.4
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.5e-119 433.3 243 85.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.5e-119 433.3 280 75.0
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.6e-119 432.6 280 73.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 9.8e-119 430.6 299 71.6
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.3e-118 430.3 309 69.6
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.7e-118 429.9 283 73.1
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 8.3e-118 427.6 307 70.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.4e-117 426.0 274 75.9
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 4.1e-117 425.2 307 70.7
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.1e-117 424.5 302 72.8
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 9.2e-117 424.1 273 75.5
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.1e-116 422.9 262 76.7
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.6e-115 417.9 272 75.7
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.0e-111 406.4 307 67.4
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 2.7e-108 396.0 287 71.1
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 5.6e-106 388.3 219 86.3
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.8e-104 381.3 301 63.1
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.2e-102 376.3 278 71.6
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 3.5e-100 369.0 259 68.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.5e-98 362.8 290 60.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.3e-98 362.5 278 64.0
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.6e-97 360.1 282 67.4
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 4.0e-96 355.5 244 75.8
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.9e-96 354.8 274 63.9
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.7e-94 350.1 304 58.6
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 9.6e-90 334.3 192 83.9
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.3e-89 334.0 190 84.7
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 6.9e-88 328.2 192 81.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 9.9e-87 324.3 192 80.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 8.4e-86 321.2 263 61.2
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.5e-85 318.5 190 80.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 6.0e-84 315.1 224 67.9
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 6.0e-84 315.1 177 84.2
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 7.4e-82 308.1 187 80.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.1e-81 304.7 243 60.9
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 9.0e-80 301.2 268 58.6
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.1e-77 294.3 210 72.4
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.6e-65 253.8 256 52.7
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 7.7e-63 245.0 183 68.3
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.9e-60 235.0 257 53.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 3.9e-59 232.6 188 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.7e-36 156.0 274 38.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.2e-35 152.5 139 58.3
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 4.8e-33 146.0 85 81.2
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 9.8e-26 121.7 315 30.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.1e-21 108.2 68 70.6
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.2e-20 104.8 65 76.9
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.0e-20 102.1 273 33.3
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.2e-15 88.2 70 70.0
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 5.9e-15 85.9 104 54.8
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 1.3e-06 58.2 71 45.1


User provided reference genes

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