Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 6.8e-167 590.5 281 100.0
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.2e-100 368.6 261 70.5
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 8.8e-98 360.9 256 70.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.4e-92 343.6 233 72.5
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 2.7e-91 339.3 214 72.4
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 3.6e-91 339.0 239 66.9
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 4.7e-91 338.6 227 70.0
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.3e-90 336.3 213 71.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.3e-90 336.3 236 67.4
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 3.0e-90 335.9 226 68.1
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 6.7e-90 334.7 214 72.4
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 6.7e-90 334.7 212 71.7
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 2.6e-89 332.8 214 70.6
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 4.4e-89 332.0 215 69.3
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 9.7e-89 330.9 218 70.2
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.7e-88 330.1 220 68.6
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 2.2e-88 329.7 214 70.1
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 3.7e-88 328.9 214 70.1
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 4.8e-88 328.6 218 68.8
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.8e-87 326.6 238 63.9
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 2.4e-87 326.2 213 71.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.1e-87 325.9 217 67.7
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 7.0e-87 324.7 201 73.1
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.2e-86 323.9 225 65.8
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 4.5e-86 322.0 214 69.2
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 5.9e-86 321.6 229 63.3
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.3e-85 320.5 212 68.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 3.8e-85 318.9 211 69.2
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 5.0e-85 318.5 213 68.1
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 8.5e-85 317.8 199 71.9
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 8.5e-85 317.8 252 58.7
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 8.5e-85 317.8 210 69.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 1.5e-84 317.0 223 64.1
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 7.2e-84 314.7 248 63.7
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 3.6e-83 312.4 229 64.6
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 6.1e-83 311.6 219 63.9
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.2e-81 307.4 203 69.0
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.3e-80 303.9 282 53.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 2.2e-80 303.1 227 62.1
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 2.2e-80 303.1 216 63.4
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 4.8e-80 302.0 206 66.0
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.1e-79 300.8 190 72.1
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 2.4e-79 299.7 191 70.7
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.1e-79 299.3 183 72.1
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 2.0e-78 296.6 231 58.0
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 5.0e-77 292.0 240 57.9
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 8.5e-77 291.2 209 63.2
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 8.5e-77 291.2 221 59.3
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 8.5e-77 291.2 182 72.0
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 7.2e-76 288.1 245 56.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.7e-75 286.2 198 65.2
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.7e-75 286.2 178 75.8
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.7e-75 285.4 200 61.5
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 4.7e-75 285.4 223 61.0
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 6.1e-75 285.0 219 58.4
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.0e-74 284.3 206 62.6
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 2.3e-74 283.1 239 56.5
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-74 283.1 217 59.9
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.0e-74 282.7 200 62.5
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.0e-74 282.7 199 65.3
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.0e-74 282.3 262 51.5
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 4.0e-74 282.3 221 61.1
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.2e-74 282.0 270 52.6
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 6.8e-74 281.6 196 64.3
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 6.8e-74 281.6 220 58.6
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 6.8e-74 281.6 219 59.8
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-73 280.0 193 65.8
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 5.7e-73 278.5 245 56.3
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 9.8e-73 277.7 200 61.0
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 2.8e-72 276.2 223 61.0
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.8e-72 276.2 225 60.0
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 8.3e-72 274.6 191 63.4
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-71 272.3 201 61.2
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 9.1e-71 271.2 191 62.8
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 9.1e-71 271.2 191 62.8
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 9.1e-71 271.2 201 60.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-70 270.4 191 62.8
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.6e-70 270.4 203 58.6
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 2.0e-70 270.0 201 60.7
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.7e-70 269.6 225 57.3
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.7e-70 269.6 191 63.4
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.5e-70 269.2 200 58.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-70 268.9 201 60.2
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-70 268.9 191 62.3
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 4.5e-70 268.9 201 60.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 4.5e-70 268.9 207 59.4
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.9e-70 268.5 191 63.4
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.9e-70 268.5 226 52.7
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.7e-70 268.1 191 62.3
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.0e-69 267.7 191 63.4
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-69 267.3 191 61.8
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.7e-69 266.9 191 62.8
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.9e-69 266.2 191 62.3
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 6.5e-69 265.0 201 60.2
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.5e-68 263.1 191 59.7
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 3.2e-68 262.7 191 63.4
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.2e-68 262.7 218 54.1
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.2e-68 262.3 191 61.8
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.1e-67 260.0 191 60.7
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 3.0e-66 256.1 248 54.4
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 4.0e-66 255.8 188 61.7
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-65 254.2 191 59.7
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.4e-65 252.7 197 58.9
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 4.4e-65 252.3 184 61.4
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 5.7e-65 251.9 187 63.6
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.7e-64 250.4 184 60.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.7e-64 250.4 187 63.6
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 2.2e-64 250.0 208 55.8
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 3.7e-64 249.2 181 61.3
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 4.9e-64 248.8 181 60.8
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 7.0e-63 245.0 185 58.9
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-62 243.4 229 52.4
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-62 243.4 192 55.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-62 243.4 192 55.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-62 243.4 192 55.7
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 3.5e-62 242.7 212 51.9
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 3.8e-61 239.2 192 55.2
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 3.8e-61 239.2 192 55.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.8e-61 239.2 181 59.1
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-59 234.2 250 46.8
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.6e-59 233.8 191 56.0
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 4.7e-59 232.3 237 51.1
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.0e-58 231.1 193 53.9
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 5.2e-58 228.8 190 55.3
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.9e-58 228.0 218 50.5
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-57 226.9 196 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 2.6e-57 226.5 191 55.0
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 5.7e-57 225.3 178 57.9
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-55 221.1 201 52.2
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.8e-55 220.3 211 53.1
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.3e-53 214.2 166 65.1
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.7e-53 213.8 252 44.4
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-53 213.4 152 65.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.0e-53 213.0 178 55.1
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.9e-52 210.3 144 68.1
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 6.2e-51 205.3 256 42.2
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-50 203.0 177 57.1
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 3.4e-41 172.9 125 60.0
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.6e-38 164.1 111 69.4
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.6e-36 155.6 116 61.2
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 7.3e-36 155.2 244 37.3
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 6.4e-32 142.1 204 38.7
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 2.4e-31 140.2 180 43.9
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 2.4e-31 140.2 180 43.9
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 7.1e-31 138.7 180 43.3
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-29 133.7 188 42.6
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 3.3e-28 129.8 116 51.7
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 5.6e-28 129.0 101 60.4
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.1e-26 124.8 86 65.1
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.9e-26 122.1 137 47.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 9.0e-26 121.7 209 35.9
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.6e-25 118.6 96 57.3
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 9.9e-25 118.2 170 44.1
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.4e-24 115.5 117 51.3
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 8.4e-24 115.2 206 35.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.4e-23 112.5 83 56.6
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 7.8e-22 108.6 77 64.9
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 5.6e-20 102.4 75 64.0
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 8.1e-19 98.6 74 63.5
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 3.1e-18 96.7 66 57.6
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 7.6e-17 92.0 67 61.2
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.0e-13 81.6 149 33.6
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 2.3e-13 80.5 148 32.4
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-13 80.5 148 32.4
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.0e-13 80.1 58 55.2
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.4e-09 66.6 47 61.7
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 9.9e-09 65.1 45 62.2
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.2e-08 63.9 147 33.3


User provided reference genes

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