Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 6.5e-134 480.7 241 100.0
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 3.4e-98 362.1 232 80.2
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.2e-88 328.9 239 72.0
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.1e-88 328.6 232 75.0
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 4.1e-88 328.6 233 73.8
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 4.1e-88 328.6 235 73.2
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 5.4e-88 328.2 231 73.2
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 7.1e-88 327.8 236 72.9
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 7.1e-88 327.8 229 74.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 6.0e-87 324.7 235 72.8
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.9e-86 322.0 241 68.5
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 3.9e-86 322.0 238 70.2
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.6e-84 316.6 234 72.6
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.4e-83 313.5 301 59.8
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 7.6e-82 307.8 237 70.5
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.3e-81 307.0 236 68.6
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.3e-81 307.0 238 66.8
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.7e-81 305.4 238 66.8
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.9e-81 305.1 234 69.7
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-80 303.5 234 66.2
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.9e-80 303.1 241 71.0
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.2e-80 302.4 233 67.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 3.2e-80 302.4 233 67.8
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.1e-80 301.2 233 67.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.6e-79 300.1 246 65.9
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.7e-79 299.3 238 67.6
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 2.7e-79 299.3 241 68.0
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.5e-79 298.9 234 69.2
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 3.5e-79 298.9 241 68.0
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 4.6e-79 298.5 214 73.8
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 7.8e-79 297.7 241 66.4
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.0e-78 297.4 233 69.1
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 1.0e-78 297.4 235 68.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.6e-76 290.0 243 65.0
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 3.6e-76 288.9 220 70.5
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.4e-75 287.0 237 64.6
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.8e-75 286.6 242 64.0
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 3.1e-75 285.8 234 67.1
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 4.0e-75 285.4 228 65.8
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 4.0e-75 285.4 240 64.6
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 5.2e-75 285.0 244 62.7
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.2e-74 283.9 241 65.1
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.5e-74 283.5 244 62.7
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.0e-74 283.1 241 65.1
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 9.9e-74 280.8 234 65.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.7e-73 280.0 240 62.9
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 2.2e-73 279.6 215 69.8
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.9e-73 279.3 236 63.6
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 3.8e-73 278.9 249 61.8
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 8.4e-73 277.7 208 69.7
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.9e-72 276.6 250 62.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.9e-72 276.6 216 65.3
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 3.2e-72 275.8 214 65.9
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 5.4e-72 275.0 190 74.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.5e-71 272.3 213 65.3
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.0e-71 271.6 241 62.7
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.8e-71 271.2 213 64.3
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.3e-70 270.4 332 50.0
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 3.0e-70 269.2 237 62.0
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.0e-70 269.2 232 63.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 3.0e-70 269.2 238 61.8
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 3.9e-70 268.9 235 63.0
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 8.7e-70 267.7 264 59.8
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.1e-69 267.3 236 62.7
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.9e-69 266.5 213 67.6
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 3.3e-69 265.8 249 61.8
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 5.6e-69 265.0 225 62.7
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 7.3e-69 264.6 215 64.2
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 1.3e-68 263.8 222 66.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 4.8e-68 261.9 213 64.3
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.8e-67 260.0 231 64.1
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.4e-67 259.6 237 59.9
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.4e-67 259.6 236 60.2
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 5.3e-67 258.5 214 65.0
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 6.9e-67 258.1 214 65.0
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 2.0e-66 256.5 236 61.9
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 2.6e-66 256.1 239 59.8
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 3.4e-66 255.8 227 59.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 4.4e-66 255.4 238 59.7
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.8e-66 255.0 213 63.8
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.3e-65 253.8 235 59.1
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.7e-65 253.4 234 60.3
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-65 253.1 211 65.4
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.9e-65 252.7 230 58.7
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.4e-65 251.5 212 61.3
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.9e-64 250.0 238 58.8
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.9e-64 250.0 214 62.1
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 5.4e-64 248.4 196 70.9
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 9.3e-64 247.7 237 59.1
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 4.6e-63 245.4 236 58.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.0e-62 242.7 240 58.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.9e-62 242.3 230 58.7
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 3.3e-61 239.2 216 58.3
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 5.6e-61 238.4 220 60.0
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.6e-61 238.4 218 60.1
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.6e-61 238.4 218 60.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 5.6e-61 238.4 148 81.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 7.4e-61 238.0 224 57.1
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 4.8e-60 235.3 217 57.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.4e-59 233.8 218 58.7
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.4e-59 233.8 240 53.8
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.4e-59 233.0 213 58.7
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 4.0e-59 232.3 228 57.0
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 5.3e-59 231.9 213 59.2
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.9e-59 231.5 239 55.6
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.5e-58 230.3 175 71.4
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 2.0e-58 229.9 231 56.7
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.0e-58 229.9 238 55.9
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.6e-58 229.6 192 62.5
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 4.5e-58 228.8 216 56.5
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.2e-57 226.5 240 53.8
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 6.4e-57 224.9 230 53.9
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.4e-56 223.8 240 53.8
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.9e-56 223.4 235 53.6
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.2e-56 222.6 236 53.8
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 7.1e-56 221.5 214 56.5
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 9.3e-56 221.1 163 69.3
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.5e-53 213.0 234 54.7
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 2.8e-52 209.5 188 63.3
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 8.1e-52 208.0 165 67.9
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 6.0e-47 191.8 197 51.8
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.0e-46 189.5 175 61.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 6.7e-46 188.3 128 72.7
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 5.7e-45 185.3 206 52.9
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.2e-44 181.4 197 55.8
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 3.1e-43 179.5 162 56.2
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 4.1e-43 179.1 184 55.4
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.5e-42 177.2 184 54.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.5e-42 177.2 184 54.9
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.5e-42 177.2 132 69.7
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 7.6e-42 174.9 236 46.2
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.2e-39 167.5 367 35.1
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.3e-38 164.1 195 53.8
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.3e-38 163.3 181 54.7
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.9e-32 143.7 200 47.5
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 5.5e-32 142.1 202 44.6
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 6.3e-20 102.1 112 54.5
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.4e-19 100.9 81 61.7
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 4.1e-19 99.4 233 34.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 4.1e-19 99.4 267 33.7
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.4e-16 88.2 139 46.0
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.6e-15 87.4 63 68.3
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.7e-15 85.9 93 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.8e-14 84.0 244 29.9
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.8e-14 81.6 51 72.5
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.5e-13 80.9 189 31.7
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.8e-12 76.6 113 44.2
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 4.8e-12 75.9 55 67.3
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.8e-12 75.9 100 46.0
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.4e-11 74.3 161 34.8
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 7.0e-11 72.0 44 75.0
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 9.1e-11 71.6 100 49.0
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.0e-10 70.5 44 77.3
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 7.2e-08 62.0 88 47.7
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 1.8e-06 57.4 65 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 4.0e-06 56.2 131 35.9
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 4.0e-06 56.2 62 43.5
Zm00001eb118880 Zea mays HOM05D000175 ORTHO05D000481 4.0e-06 56.2 62 45.2
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 5.2e-06 55.8 61 45.9
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 5.2e-06 55.8 62 43.5
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 6.8e-06 55.5 62 43.5
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 6.8e-06 55.5 62 43.5
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 6.8e-06 55.5 62 43.5
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 8.8e-06 55.1 62 41.9
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 8.8e-06 55.1 62 43.5
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 8.8e-06 55.1 62 43.5
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 8.8e-06 55.1 62 43.5


User provided reference genes

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