Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 7.5e-58 226.9 106 100.0
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.1e-45 186.4 100 81.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 76.4
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 8.0e-44 180.3 106 76.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.8e-43 179.1 101 78.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.3e-43 178.7 101 76.2
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.3e-43 178.7 100 77.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 5.2e-43 177.6 102 75.5
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 74.3
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 72.1
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 7.5e-42 173.7 105 72.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 72.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 72.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 72.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.7e-41 172.6 96 77.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.3e-41 170.6 104 72.1
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.4e-40 169.5 104 71.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.4e-40 169.5 106 70.8
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.8e-40 169.1 96 75.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.4e-40 168.7 103 71.8
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.4e-40 168.7 104 71.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.1e-40 167.9 103 71.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 5.4e-40 167.5 105 68.6
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 7.0e-40 167.2 105 68.6
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 7.0e-40 167.2 97 73.2
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.2e-40 166.8 105 68.6
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.6e-39 166.0 96 75.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.0e-39 165.6 105 68.6
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.7e-39 165.2 94 75.5
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 68.3
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 68.3
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.7e-39 165.2 100 71.0
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.5e-39 164.9 96 75.0
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.5e-39 164.9 104 68.3
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 68.6
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.5e-39 164.5 105 67.6
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 4.5e-39 164.5 105 66.7
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.5e-39 164.5 105 66.7
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 5.9e-39 164.1 104 66.3
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.9e-39 164.1 96 71.9
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 5.9e-39 164.1 97 73.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 66.7
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 67.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 7.8e-39 163.7 104 70.2
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 68.6
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.0e-38 163.3 97 73.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-38 163.3 105 67.6
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.0e-38 163.3 102 69.6
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 69.2
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.3e-38 162.9 98 70.4
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 66.3
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 66.3
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-38 162.5 105 67.6
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-38 162.5 105 68.6
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.7e-38 162.5 98 71.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.7e-38 162.5 104 67.3
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.7e-38 162.5 105 67.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.7e-38 162.5 105 65.7
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.3e-38 162.2 97 73.2
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.9e-38 161.8 96 71.9
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.9e-38 161.8 105 67.6
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.9e-38 161.8 100 70.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.9e-38 161.8 105 66.7
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.8e-38 161.4 99 70.7
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.8e-38 161.4 97 72.2
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.8e-38 161.4 97 72.2
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.8e-38 161.4 105 66.7
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.0e-38 161.0 98 69.4
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.0e-38 161.0 99 70.7
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.6e-38 160.6 97 72.2
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 6.6e-38 160.6 99 71.7
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 8.6e-38 160.2 105 66.7
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 8.6e-38 160.2 97 72.2
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 8.6e-38 160.2 102 68.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.1e-37 159.8 96 72.9
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.5e-37 159.5 99 68.7
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-37 159.1 105 66.7
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-37 159.1 105 66.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.9e-37 159.1 98 70.4
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.9e-37 159.1 104 66.3
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.9e-37 159.1 105 65.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.5e-37 158.7 105 65.7
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.5e-37 158.7 105 65.7
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.5e-37 158.7 105 65.7
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 65.7
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.3e-37 158.3 97 69.1
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.3e-37 158.3 87 78.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.3e-37 157.9 97 70.1
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.6e-37 157.5 105 66.7
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.6e-37 157.5 105 65.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 64.8
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 64.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 64.8
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 64.8
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 7.3e-37 157.1 97 69.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 64.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 7.3e-37 157.1 98 70.4
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 7.3e-37 157.1 104 68.3
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 9.5e-37 156.8 105 64.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 9.5e-37 156.8 105 64.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 9.5e-37 156.8 105 64.8
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 9.5e-37 156.8 105 65.7
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 9.5e-37 156.8 97 70.1
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-36 156.4 104 65.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.2e-36 156.4 105 65.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.2e-36 156.4 96 70.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.6e-36 156.0 98 69.4
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.6e-36 156.0 98 69.4
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.6e-36 156.0 103 66.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.1e-36 155.6 105 64.8
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.8e-36 155.2 105 61.9
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.8e-36 155.2 98 68.4
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.8e-36 155.2 98 69.4
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.8e-36 155.2 87 74.7
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 3.6e-36 154.8 105 65.7
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.7e-36 154.5 98 65.3
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.7e-36 154.5 105 63.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.7e-36 154.5 105 63.8
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.7e-36 154.5 99 68.7
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 4.7e-36 154.5 105 63.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 8.0e-36 153.7 105 64.8
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.0e-35 153.3 105 63.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.0e-35 153.3 105 63.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.8e-35 152.5 105 62.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.3e-35 152.1 103 64.1
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.0e-35 151.8 98 66.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.0e-35 151.8 104 64.4
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.0e-35 151.4 105 62.9
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.8e-35 150.6 160 48.1
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 8.9e-35 150.2 102 64.7
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 8.9e-35 150.2 102 64.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-34 149.8 105 63.8
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.5e-34 147.1 96 64.6
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.9e-33 145.2 105 59.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.0e-30 136.7 74 75.7
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 3.9e-30 134.8 69 82.6
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.0e-30 134.4 102 57.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 6.6e-30 134.0 104 56.7
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.6e-30 133.7 93 60.2
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.8e-28 128.6 98 56.1
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.4e-27 126.3 93 60.2
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 2.3e-27 125.6 63 82.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 6.8e-27 124.0 94 52.1
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 9.8e-26 120.2 87 59.8
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 8.3e-25 117.1 82 59.8
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-24 116.3 80 61.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.3e-21 104.8 71 66.2
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 8.1e-20 100.5 73 61.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.2e-19 97.8 93 46.2
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 5.8e-18 94.4 67 61.2
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 7.5e-18 94.0 52 76.9
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.4e-16 89.7 69 60.9
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 5.4e-16 87.8 63 60.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 7.1e-16 87.4 54 72.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.6e-15 86.3 90 42.2
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.6e-15 86.3 55 70.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.5e-15 85.1 63 60.3
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.5e-15 85.1 54 66.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 4.6e-15 84.7 56 66.1
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 3.0e-14 82.0 63 58.7
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.6e-14 80.5 50 72.0
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.1e-13 80.1 42 76.2
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.9e-13 79.3 41 78.0
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.0e-11 71.6 47 66.0
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 4.9e-09 64.7 48 60.4
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 1.7e-06 56.2 96 32.3


User provided reference genes

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