Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 0.0e+00 1342.4 705 100.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 3.0e-179 632.9 728 54.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 4.8e-169 599.0 739 52.8
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.8e-163 580.5 715 51.5
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 5.5e-133 479.2 769 44.5
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.2e-112 410.2 782 39.5
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 9.5e-109 398.7 754 40.8
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.5e-103 380.2 793 39.2
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 6.6e-102 375.9 727 39.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.1e-101 375.2 758 38.7
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.3e-97 361.7 773 37.1
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 3.8e-97 360.1 755 38.7
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 7.1e-96 355.9 642 41.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.7e-94 351.3 758 38.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.2e-92 345.1 784 35.7
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.0e-91 340.1 689 39.2
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 4.4e-90 336.7 793 37.8
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.7e-89 334.7 737 38.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.7e-87 327.4 755 36.8
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.4e-82 310.5 767 33.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 5.8e-82 309.7 568 41.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.4e-81 306.2 860 34.9
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.2e-80 303.5 789 35.9
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 7.9e-79 299.3 749 35.1
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.8e-76 290.8 749 36.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.5e-74 285.0 662 37.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.3e-73 282.0 767 33.4
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.0e-70 272.3 728 34.9
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.5e-69 267.7 809 33.6
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 5.6e-69 266.5 745 34.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 7.4e-69 266.2 728 32.8
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.2e-66 258.8 768 34.2
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-66 258.5 736 32.9
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.4e-66 257.3 737 33.9
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.9e-65 254.2 703 34.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 6.0e-63 246.5 819 32.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 7.9e-63 246.1 751 32.4
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.3e-62 244.6 732 32.4
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 7.4e-61 239.6 786 31.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 7.4e-61 239.6 744 33.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 8.2e-60 236.1 743 31.9
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.2e-60 236.1 536 38.8
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.3e-59 233.4 357 47.6
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.4e-58 230.7 736 32.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 7.6e-58 229.6 737 32.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.3e-57 228.8 675 31.7
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.9e-56 224.9 744 31.0
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 4.2e-56 223.8 781 31.2
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.1e-55 221.5 736 31.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 3.6e-55 220.7 646 35.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 3.9e-54 217.2 652 34.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.5e-53 214.5 680 31.5
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.7e-52 211.8 566 34.6
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 8.2e-52 209.5 738 29.8
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.1e-51 207.2 737 30.1
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.5e-50 205.3 771 29.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 4.5e-50 203.8 772 31.0
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 4.5e-50 203.8 429 36.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.0e-49 202.6 158 69.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.5e-48 198.0 759 29.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.5e-48 198.0 682 31.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.7e-47 193.7 643 32.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 4.7e-47 193.7 538 32.7
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.0e-46 192.6 737 30.0
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.1e-46 190.3 765 31.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.4e-45 187.2 796 28.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 7.4e-45 186.4 617 32.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.2e-44 184.9 395 36.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 8.2e-44 183.0 431 35.3
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-43 181.8 646 32.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-43 181.4 645 32.7
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 5.3e-43 180.3 763 30.4
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 2.6e-42 177.9 479 33.6
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 2.6e-42 177.9 737 29.6
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.4e-42 177.6 382 39.8
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.3e-41 175.6 759 29.0
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 2.2e-41 174.9 451 34.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 8.5e-41 172.9 442 33.7
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.9e-40 171.8 368 38.3
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.2e-40 171.0 767 27.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 4.2e-40 170.6 788 27.3
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 9.4e-40 169.5 742 30.6
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.2e-39 169.1 141 61.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.3e-36 159.1 341 36.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.7e-36 158.7 380 38.2
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.1e-35 156.0 711 27.8
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 3.1e-35 154.5 517 32.7
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 2.6e-34 151.4 330 38.2
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.5e-34 151.0 277 41.2
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 5.9e-34 150.2 376 37.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.5e-32 145.6 575 29.2
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.5e-32 144.8 726 26.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.2e-32 144.1 529 30.6
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 9.4e-32 142.9 308 37.0
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 4.7e-31 140.6 744 28.0
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 6.1e-31 140.2 342 36.5
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-30 139.4 529 30.8
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.4e-30 139.0 232 42.2
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.8e-30 138.7 660 26.2
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.2e-30 137.1 277 39.0
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.2e-30 137.1 253 40.7
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 6.7e-30 136.7 438 32.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 8.8e-30 136.3 326 37.7
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 8.8e-30 136.3 720 27.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.0e-29 135.2 266 37.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.0e-29 135.2 276 38.0
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.0e-29 135.2 276 37.7
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-28 132.5 317 35.6
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.3e-28 132.5 284 36.6
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.7e-28 132.1 274 38.7
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.2e-28 131.7 327 36.7
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 2.8e-28 131.3 620 27.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.1e-27 127.5 326 36.2
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.6e-26 125.6 265 37.0
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 2.0e-26 125.2 382 31.9
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.7e-26 124.8 243 36.6
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.9e-26 123.6 94 60.6
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-25 122.9 350 34.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-25 122.5 236 39.4
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.8e-25 120.9 326 35.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 5.5e-24 117.1 274 35.4
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 9.4e-24 116.3 723 26.7
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.2e-23 115.9 222 39.2
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-23 115.5 253 33.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.7e-23 114.8 506 29.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 6.8e-22 110.2 387 32.3
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 7.5e-21 106.7 265 32.8
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.7e-20 105.5 206 38.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.7e-20 105.5 251 33.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.3e-20 103.2 258 30.2
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 1.1e-19 102.8 404 28.2
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 5.4e-19 100.5 398 26.4
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.6e-18 99.0 400 26.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.9e-18 97.1 61 73.8
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.0e-17 96.3 400 26.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.9e-16 92.0 166 35.5
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 9.5e-16 89.7 517 28.0
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.6e-15 87.8 164 39.6
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 8.0e-15 86.7 544 26.8
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.8e-14 85.5 145 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.8e-14 85.5 145 36.6
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 5.2e-14 84.0 140 37.1
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 8.9e-14 83.2 200 32.5
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.6e-13 81.6 414 26.3
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.7e-13 80.5 161 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.8e-13 79.7 272 29.8
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 6.3e-12 77.0 131 37.4
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 8.3e-12 76.6 112 37.5
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.4e-11 75.9 90 53.3
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 2.4e-11 75.1 153 35.3
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 4.1e-11 74.3 85 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.4e-11 73.9 258 29.1
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 3.5e-10 71.2 509 25.0
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 5.0e-09 67.4 96 46.9
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 8.6e-09 66.6 88 47.7
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.3e-08 64.3 57 52.6
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.2e-07 62.8 55 54.5
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-06 59.7 133 39.1
SEGI_36783 Sequoiadendron giganteum HOM05D003739 ORTHO05D386895 8.9e-06 56.6 139 36.7


User provided reference genes

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