Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.0e-69 264.2 127 100.0
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.0e-65 252.3 124 95.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.3e-64 249.6 124 92.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-64 248.4 124 92.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 8.3e-64 246.9 124 91.9
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.1e-63 244.6 124 90.3
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 4.1e-63 244.6 124 90.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.4e-63 244.2 124 89.5
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 7.1e-63 243.8 124 91.1
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 9.2e-63 243.4 124 91.9
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 9.2e-63 243.4 124 91.1
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 9.2e-63 243.4 124 91.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.2e-62 243.0 124 90.3
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 89.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 88.7
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 90.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 90.3
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 89.5
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 90.3
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 88.7
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 88.7
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.6e-62 242.7 124 90.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.1e-62 242.3 124 91.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.1e-62 242.3 124 90.3
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 2.1e-62 242.3 124 91.1
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.7e-62 241.9 124 88.7
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.7e-62 241.9 124 91.1
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 3.5e-62 241.5 124 88.7
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.5e-62 241.5 124 88.7
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.5e-62 241.5 124 89.5
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 3.5e-62 241.5 124 88.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.6e-62 241.1 124 90.3
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.6e-62 241.1 124 89.5
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 4.6e-62 241.1 124 87.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 6.0e-62 240.7 124 87.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 7.8e-62 240.4 124 88.7
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.0e-61 240.0 124 90.3
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.3e-61 239.6 124 89.5
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.3e-61 239.6 124 88.7
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.3e-61 239.6 124 89.5
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.3e-61 239.6 124 87.9
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 85.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 87.1
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 87.9
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 87.9
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 88.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.7e-61 239.2 124 87.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.0e-61 238.4 124 87.9
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 3.0e-61 238.4 124 87.1
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.0e-61 238.4 124 87.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.0e-61 238.4 124 89.5
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-61 238.0 124 86.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-61 238.0 124 86.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.9e-61 238.0 124 87.1
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 5.1e-61 237.7 124 84.7
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 5.1e-61 237.7 124 87.9
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 6.6e-61 237.3 124 87.1
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.6e-61 236.9 124 88.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.6e-61 236.9 124 88.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 8.6e-61 236.9 124 87.1
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.1e-60 236.5 124 87.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.1e-60 236.5 124 87.1
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-60 236.5 124 86.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-60 236.5 124 86.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.5e-60 236.1 124 87.9
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.5e-60 236.1 124 85.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.5e-60 236.1 124 87.9
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.9e-60 235.7 124 87.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.9e-60 235.7 124 87.9
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 87.9
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-60 235.7 124 83.9
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.3e-60 235.0 126 85.7
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 3.3e-60 235.0 124 87.1
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.3e-60 235.0 124 87.1
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.3e-60 235.0 124 86.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.3e-60 235.0 124 87.1
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.3e-60 234.6 124 86.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 4.3e-60 234.6 124 85.5
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.3e-60 234.6 124 85.5
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.6e-60 234.2 124 87.9
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.6e-60 234.2 124 87.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 5.6e-60 234.2 124 85.5
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 5.6e-60 234.2 124 85.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.3e-60 233.8 124 87.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 7.3e-60 233.8 124 87.9
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 9.5e-60 233.4 124 84.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 9.5e-60 233.4 124 83.9
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 9.5e-60 233.4 124 83.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.2e-59 233.0 124 86.3
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.2e-59 233.0 124 84.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.2e-59 233.0 124 84.7
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.6e-59 232.6 124 86.3
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.1e-59 232.3 124 85.5
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.6e-59 231.5 124 83.9
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.7e-59 231.1 124 83.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 4.7e-59 231.1 124 83.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.8e-58 229.2 124 82.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.4e-58 228.8 124 82.3
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 3.1e-58 228.4 124 83.1
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.5e-57 226.1 124 81.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-57 225.7 124 83.1
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 4.4e-57 224.6 124 81.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 9.9e-57 223.4 124 80.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 4.9e-56 221.1 124 80.6
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 8.4e-56 220.3 118 84.7
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 8.4e-56 220.3 124 79.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 8.4e-56 220.3 124 84.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.6e-54 216.1 124 79.0
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.6e-54 214.5 124 80.6
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.9e-52 209.1 175 61.1
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.3e-52 208.0 124 76.6
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 4.7e-51 204.5 124 77.4
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 6.2e-51 204.1 124 74.2
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.3e-48 196.4 124 71.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 3.8e-48 194.9 125 74.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.4e-47 192.2 124 75.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 4.3e-44 181.4 124 73.4
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 7.3e-44 180.6 124 75.0
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-41 172.9 118 66.1
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 3.4e-41 171.8 124 60.5
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.7e-40 169.5 125 69.6
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 8.4e-40 167.2 124 67.7
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.9e-39 166.0 124 59.7
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.2e-39 165.2 124 62.9
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.6e-36 154.5 85 83.5
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 9.6e-36 153.7 124 63.7
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 4.9e-32 141.4 124 54.8
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.6e-30 136.3 81 79.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.3e-28 128.6 71 80.3
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.0e-25 119.4 125 50.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-23 113.2 77 71.4
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.2e-22 110.2 61 85.2
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 3.0e-21 105.5 49 100.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.5e-20 102.4 108 47.2
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 2.1e-14 82.8 50 74.0
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 4.8e-11 71.6 42 73.8
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.1e-06 56.2 34 82.4


User provided reference genes

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