Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 2.2e-136 489.2 294 100.0
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.8e-70 269.6 174 79.9
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 8.1e-70 268.1 170 77.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 8.1e-70 268.1 171 79.5
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 3.4e-68 262.7 235 64.3
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 2.9e-67 259.6 248 65.7
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 4.9e-67 258.8 241 66.4
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 6.4e-67 258.5 243 65.8
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.9e-66 256.9 173 73.4
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 7.1e-66 255.0 179 72.6
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 9.3e-66 254.6 245 69.8
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 3.5e-65 252.7 175 74.9
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 3.5e-65 252.7 193 69.4
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 3.5e-65 252.7 193 69.4
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 4.6e-65 252.3 242 70.2
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 7.8e-65 251.5 180 70.6
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.3e-64 250.0 241 64.7
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 3.9e-64 249.2 178 70.8
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 5.1e-64 248.8 174 73.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 5.1e-64 248.8 174 71.8
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 6.6e-64 248.4 176 72.7
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 8.7e-64 248.1 158 77.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 1.1e-63 247.7 176 71.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 1.1e-63 247.7 241 63.1
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.5e-63 247.3 190 68.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.9e-63 246.9 171 73.1
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 3.3e-63 246.1 176 71.6
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 3.3e-63 246.1 174 72.4
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 5.6e-63 245.4 170 73.5
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 5.6e-63 245.4 173 70.5
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 5.6e-63 245.4 172 71.5
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 9.6e-63 244.6 175 69.7
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 9.6e-63 244.6 175 69.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 1.3e-62 244.2 163 73.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.3e-62 244.2 261 63.6
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.6e-62 243.8 240 64.6
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.6e-62 243.8 175 70.3
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 2.8e-62 243.0 169 71.0
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 3.6e-62 242.7 190 65.3
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.6e-62 242.7 249 65.9
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 3.6e-62 242.7 175 71.4
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 8.1e-62 241.5 177 68.9
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 8.1e-62 241.5 171 71.3
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.1e-62 241.5 252 61.9
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.1e-61 241.1 172 70.3
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.1e-61 241.1 170 70.6
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.4e-61 240.7 241 58.5
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 2.4e-61 240.0 177 70.6
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.0e-61 239.2 193 71.5
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 5.3e-61 238.8 244 61.5
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.0e-61 238.0 177 70.1
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.5e-60 237.3 177 69.5
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.6e-60 236.5 244 63.1
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 2.6e-60 236.5 170 70.0
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 4.5e-60 235.7 173 68.8
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.2e-59 233.4 163 73.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 3.8e-59 232.6 245 62.9
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 8.4e-59 231.5 143 77.6
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.4e-58 230.7 239 61.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.4e-58 230.7 134 81.3
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 2.4e-58 229.9 154 74.7
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 3.2e-58 229.6 156 73.7
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 5.4e-58 228.8 243 63.0
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 7.1e-58 228.4 143 78.3
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 9.3e-58 228.0 143 75.5
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 2.1e-57 226.9 176 65.9
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 2.7e-57 226.5 142 78.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 3.5e-57 226.1 143 76.9
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.0e-56 224.6 161 67.7
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 2.3e-56 223.4 150 72.7
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.0e-56 223.0 130 81.5
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 3.9e-56 222.6 159 67.3
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 8.7e-56 221.5 143 76.9
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.9e-55 220.3 170 64.1
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 3.3e-55 219.5 170 63.5
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.6e-55 218.8 180 61.1
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.6e-55 218.8 180 61.1
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 7.4e-55 218.4 143 75.5
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 7.4e-55 218.4 128 80.5
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 7.4e-55 218.4 155 70.3
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 9.6e-55 218.0 170 62.9
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 1.3e-54 217.6 183 60.7
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 1.3e-54 217.6 183 60.7
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 8.1e-54 214.9 238 58.8
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 5.3e-53 212.2 157 66.2
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 9.0e-53 211.5 238 58.4
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.7e-51 207.2 239 50.2
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 8.4e-51 204.9 193 59.6
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.1e-47 194.5 158 63.9
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 5.8e-44 182.2 169 53.3
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.0e-43 181.4 153 62.7
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 2.2e-43 180.3 175 56.0
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 4.2e-42 176.0 175 55.4
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 6.0e-41 172.2 172 54.7
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.3e-38 164.5 91 82.4
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 8.2e-38 161.8 151 62.3
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 7.2e-34 148.7 127 63.0
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 6.1e-33 145.6 132 60.6
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.9e-32 142.9 143 54.5
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 4.8e-30 136.0 182 62.6
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 4.8e-30 136.0 182 62.6
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 4.1e-29 132.9 189 44.4
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.9e-27 126.7 163 45.4
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 6.5e-27 125.6 131 53.4
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.1e-21 106.7 101 60.4
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.6e-20 103.6 65 81.5
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 3.4e-20 103.2 64 79.7
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 3.0e-16 90.1 108 42.6
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 3.0e-16 90.1 93 55.9
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.4e-15 86.3 65 66.2
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 2.7e-09 67.0 31 83.9
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 8.0e-09 65.5 37 81.1
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.3e-08 63.9 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 7.5e-07 58.9 57 56.1
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 9.7e-07 58.5 52 63.5


User provided reference genes

Program Settings