Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 5.2e-118 427.9 224 100.0
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.2e-111 406.8 224 95.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 6.3e-63 245.0 227 62.6
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.2e-61 240.7 211 68.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 6.5e-60 235.0 227 59.5
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 5.1e-57 225.3 232 57.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.1e-56 224.2 234 57.7
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 9.7e-56 221.1 226 57.1
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.1e-54 217.6 231 57.6
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.4e-54 216.5 214 59.3
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 2.4e-54 216.5 254 53.5
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.7e-52 210.3 220 56.4
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.7e-52 210.3 221 57.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-52 210.3 225 55.1
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 2.2e-52 209.9 227 55.5
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 2.9e-52 209.5 225 56.9
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 3.8e-52 209.1 212 57.5
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.5e-52 208.4 235 56.6
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.4e-51 207.2 234 56.8
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.9e-51 206.8 202 60.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.2e-51 206.1 232 55.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.6e-50 203.8 220 56.4
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.6e-50 203.8 230 56.1
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.6e-50 203.8 232 56.0
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.1e-50 203.4 215 56.7
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.7e-50 203.0 224 55.8
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.7e-50 203.0 222 53.2
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 4.7e-50 202.2 233 54.5
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 6.1e-50 201.8 219 55.7
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.1e-50 201.8 231 54.1
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 7.9e-50 201.4 240 50.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 7.9e-50 201.4 231 54.5
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.0e-49 201.1 229 52.4
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 3.0e-49 199.5 215 54.4
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.0e-49 199.5 190 60.5
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 5.1e-49 198.7 223 55.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 6.7e-49 198.4 217 57.6
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 6.7e-49 198.4 206 58.3
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 8.8e-49 198.0 214 57.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 8.8e-49 198.0 220 54.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.1e-48 197.6 227 56.4
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-48 197.6 225 54.2
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.5e-48 197.2 203 60.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.0e-48 196.8 221 56.6
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.3e-48 196.1 226 52.2
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.4e-48 195.7 204 57.4
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.7e-48 195.3 235 51.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.3e-47 194.1 203 59.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.7e-47 193.7 217 55.8
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 4.8e-47 192.2 227 52.4
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 8.2e-47 191.4 229 53.3
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 8.2e-47 191.4 208 56.7
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.0e-46 188.3 208 56.7
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 7.0e-46 188.3 261 48.3
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.6e-45 186.4 231 50.6
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 5.9e-45 185.3 209 53.6
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.0e-44 184.5 227 53.7
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.3e-44 184.1 223 50.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.7e-44 183.7 269 44.2
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.8e-44 182.6 231 48.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 3.8e-44 182.6 208 52.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 8.5e-44 181.4 253 47.4
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-43 180.6 251 47.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.9e-43 180.3 214 52.3
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.9e-43 180.3 202 54.0
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-43 179.9 231 48.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 7.2e-43 178.3 258 45.0
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 9.4e-43 177.9 268 45.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.6e-42 177.2 233 47.6
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.1e-42 176.8 214 50.9
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.7e-42 176.4 252 45.6
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 2.7e-42 176.4 251 46.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 6.1e-42 175.3 251 47.0
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 6.1e-42 175.3 222 51.8
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 6.1e-42 175.3 229 48.9
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.3e-41 173.3 208 54.3
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 5.2e-41 172.2 226 48.7
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 6.7e-41 171.8 239 46.9
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 6.7e-41 171.8 223 47.5
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.7e-40 168.7 208 48.6
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 7.5e-40 168.3 249 44.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 9.7e-40 167.9 169 58.0
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.3e-39 167.5 256 43.8
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.3e-39 167.5 213 50.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 3.7e-39 166.0 149 63.1
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.8e-39 165.6 208 50.0
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.4e-38 164.1 162 59.9
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-38 163.7 225 48.9
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-38 163.3 224 48.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 3.1e-38 162.9 217 47.9
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 5.3e-38 162.2 217 48.4
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.0e-38 161.8 170 53.5
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 7.0e-38 161.8 177 54.8
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.6e-37 160.6 281 42.3
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.7e-37 159.8 228 45.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.5e-37 159.5 200 52.0
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-37 159.1 221 48.4
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.5e-37 159.1 253 45.1
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.9e-37 158.7 229 45.4
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 7.7e-37 158.3 225 48.0
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 7.7e-37 158.3 213 48.8
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.7e-36 157.1 223 47.1
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.7e-36 157.1 223 47.1
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-35 154.5 227 48.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.1e-35 154.5 208 46.6
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 3.2e-35 152.9 149 61.7
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.1e-34 150.2 190 51.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 4.0e-33 146.0 205 48.8
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 4.0e-33 146.0 149 57.0
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 5.2e-33 145.6 203 47.8
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.2e-32 144.4 251 41.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-32 144.4 191 50.3
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.0e-32 143.7 216 43.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 9.8e-32 141.4 255 40.8
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-31 138.3 205 47.8
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 8.3e-31 138.3 274 38.7
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 3.1e-30 136.3 230 45.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.7e-29 131.7 202 43.1
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.0e-28 131.3 222 39.6
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.9e-27 127.1 153 54.2
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.2e-27 126.3 194 47.4
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.2e-26 124.4 172 45.3
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 4.7e-26 122.5 174 46.0
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.4e-25 120.9 231 40.7
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.8e-25 120.6 174 47.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.0e-25 119.8 169 49.7
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.2e-24 117.9 151 48.3
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.0e-24 117.1 167 44.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.6e-24 116.7 228 38.2
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.8e-23 113.2 257 35.0
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.8e-23 113.2 257 35.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-22 110.2 203 42.9
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 5.4e-22 109.0 179 44.1
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 5.4e-22 109.0 179 44.1
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.6e-21 107.5 120 57.5
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.9e-20 103.2 139 48.2
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 5.0e-20 102.4 73 67.1
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-19 100.9 84 66.7
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-19 100.9 197 40.6
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 4.7e-18 95.9 170 41.2
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-18 95.5 166 43.4
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 8.0e-18 95.1 172 42.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.8e-17 94.0 145 46.2
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 5.7e-16 89.0 197 37.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-15 85.9 58 75.9
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-15 85.1 63 69.8
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-15 85.1 63 69.8
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-15 85.1 63 69.8
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-15 85.1 63 69.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 3.2e-14 83.2 132 40.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-14 82.8 56 76.8
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 5.4e-14 82.4 76 63.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-13 81.3 56 75.0
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-13 81.3 56 75.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.6e-13 80.9 165 40.6
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.7e-13 80.1 186 37.6
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.0e-12 76.6 186 37.1
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 6.6e-12 75.5 188 35.1
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 9.5e-11 71.6 54 68.5
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.0e-09 68.2 86 47.7
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-09 67.8 46 73.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-09 67.8 46 73.9
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-09 67.0 140 40.0
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.0e-08 63.9 51 62.7
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 5.8e-08 62.4 185 29.7
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-07 60.5 113 41.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.9e-07 60.1 156 33.3
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.7e-07 59.7 92 45.7
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.9e-07 59.3 51 60.8
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.4e-06 57.8 60 55.0


User provided reference genes

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