Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 0.0e+00 1546.2 754 100.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 0.0e+00 1086.6 732 73.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.6e-311 1071.2 723 72.1
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.3e-310 1068.5 722 72.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.1e-310 1067.4 722 71.9
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.6e-287 991.1 715 68.5
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.1e-277 959.9 721 63.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.8e-276 955.3 728 64.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.7e-276 954.9 723 63.3
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.8e-276 954.5 723 63.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.5e-274 949.5 724 62.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.5e-272 942.2 720 62.4
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 8.8e-270 933.7 725 62.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.7e-268 928.3 698 65.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.2e-265 919.1 686 67.1
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.7e-261 904.4 716 61.6
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.8e-260 902.1 680 64.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.7e-260 901.7 728 60.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.0e-259 897.5 694 62.0
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.5e-258 894.8 724 60.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 8.5e-257 890.6 703 61.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.9e-256 889.4 749 60.1
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 7.2e-256 887.5 726 58.8
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.6e-255 885.2 726 60.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.0e-254 881.7 687 62.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.8e-254 880.6 687 62.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.2e-253 880.2 721 59.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.7e-253 877.9 685 62.2
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 9.8e-253 877.1 714 61.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.3e-252 876.7 687 62.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.7e-252 875.2 686 62.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.0e-250 869.4 726 59.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.9e-250 867.8 681 61.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.3e-249 866.7 715 59.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.7e-249 866.3 615 66.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.3e-249 865.9 676 61.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.9e-249 865.5 679 62.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.5e-248 862.4 731 58.3
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.5e-248 862.4 680 59.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.5e-248 861.3 709 58.8
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 5.5e-248 861.3 689 60.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 5.5e-248 861.3 680 61.6
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 8.9e-246 854.0 705 59.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.7e-244 849.7 714 58.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.8e-243 846.3 695 59.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.1e-243 845.1 664 62.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-242 843.6 702 59.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.7e-241 839.7 706 57.1
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-240 837.0 705 58.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-240 836.6 711 58.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.5e-240 836.6 685 60.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-240 835.9 729 57.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 5.6e-240 834.7 698 59.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.5e-240 833.9 705 58.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.6e-239 833.2 709 56.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.8e-239 832.4 700 59.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.6e-239 832.0 710 57.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.0e-238 828.6 695 58.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.4e-237 825.5 731 58.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.4e-237 825.5 709 55.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-236 823.5 713 58.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.3e-236 823.5 705 58.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.7e-236 823.2 675 59.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.9e-236 822.4 681 58.1
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.9e-236 821.6 719 56.2
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.6e-234 816.6 724 53.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.6e-234 816.6 709 57.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.5e-234 815.5 688 59.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.5e-234 815.5 673 59.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.5e-234 815.5 703 56.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.0e-233 811.6 684 58.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 6.6e-233 811.2 706 57.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 9.5e-232 807.4 721 56.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.1e-231 806.2 592 66.4
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.8e-230 803.1 731 56.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.2e-229 800.4 681 58.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.0e-225 785.8 690 56.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.9e-225 785.4 740 52.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.8e-222 776.5 698 55.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.8e-222 774.6 631 60.5
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-221 773.9 591 62.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.6e-221 772.7 694 54.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.9e-219 766.5 618 59.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.3e-217 760.4 892 46.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.2e-215 751.5 715 53.0
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-214 750.7 682 55.7
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.9e-212 742.7 698 52.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.4e-212 741.5 680 52.9
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-211 740.7 725 52.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.4e-211 740.3 677 52.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-210 736.9 678 53.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.0e-209 734.2 726 50.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.5e-208 730.3 730 53.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.5e-208 729.6 684 52.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.6e-207 725.7 677 52.1
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.0e-206 722.2 700 51.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-205 719.2 730 52.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.9e-205 717.6 681 51.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-204 717.2 681 51.5
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.3e-204 717.2 681 51.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-204 716.8 681 51.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.2e-204 716.5 678 54.9
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.4e-203 713.8 692 52.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-203 713.8 688 50.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-203 713.8 687 51.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.8e-202 708.0 673 55.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.3e-201 707.2 535 64.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.0e-201 706.1 739 48.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.7e-201 704.5 699 50.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-200 703.7 716 49.7
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.5e-200 703.0 677 51.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-200 703.0 671 55.1
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-199 700.3 712 51.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.1e-199 699.9 717 50.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.8e-199 698.7 761 49.1
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.4e-198 697.2 698 52.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.1e-198 696.0 691 49.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.0e-198 695.7 695 49.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.7e-196 690.3 689 50.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.4e-195 687.2 726 49.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.9e-195 686.8 687 52.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-194 682.9 673 53.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 5.6e-192 675.2 646 52.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-191 673.3 690 51.0
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.8e-189 665.2 725 49.2
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-185 652.9 709 49.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.5e-179 633.3 562 55.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.4e-174 616.7 677 48.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.6e-173 613.2 724 46.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.4e-171 607.4 533 56.1
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.2e-171 605.1 696 45.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.5e-147 526.9 550 48.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-139 501.5 402 62.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-128 463.0 335 63.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 9.2e-126 455.3 427 50.6
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.9e-115 421.0 390 53.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.9e-111 407.1 297 62.0
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.5e-99 368.2 404 47.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.9e-99 367.9 463 41.0
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-99 367.9 231 75.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 5.2e-97 359.8 327 55.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-93 348.2 464 41.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.2e-87 327.8 564 34.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 3.3e-83 313.9 311 47.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 4.0e-81 307.0 545 33.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.7e-79 301.6 579 34.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.8e-60 238.4 165 68.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.8e-57 228.4 146 71.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.9e-53 213.0 189 57.1
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 6.3e-50 203.4 250 46.0
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.8e-49 201.8 212 49.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.8e-47 194.1 134 67.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.5e-46 190.3 212 48.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-45 188.7 127 66.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-42 178.7 222 43.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.0e-39 169.5 182 47.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.7e-35 153.7 388 29.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-32 144.1 99 69.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-32 144.1 99 69.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-32 144.1 99 69.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-29 136.0 281 33.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 7.5e-27 126.7 135 45.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 5.0e-23 114.0 253 32.8
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 5.5e-22 110.5 255 32.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-21 107.8 238 33.6
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-18 98.6 149 38.9
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.4e-17 95.1 59 67.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-16 92.4 74 60.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.0e-12 79.7 142 32.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-11 74.3 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-11 74.3 48 62.5
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 7.0e-09 67.0 54 61.1


User provided reference genes

Program Settings