Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 2.0e-62 242.3 125 100.0
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 9.1e-39 163.7 123 71.5
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 2.8e-32 142.1 124 65.3
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 2.4e-31 139.0 113 69.0
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 4.1e-31 138.3 124 61.3
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 1.6e-30 136.3 125 64.0
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 1.0e-29 133.7 123 59.3
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 2.3e-29 132.5 105 62.9
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 3.8e-29 131.7 118 60.2
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 5.0e-29 131.3 125 60.0
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 6.6e-29 131.0 123 57.7
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 8.6e-29 130.6 126 60.3
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.5e-28 129.8 122 62.3
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 2.5e-28 129.0 123 59.3
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 5.6e-28 127.9 123 57.7
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 1.6e-27 126.3 124 58.1
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.1e-27 125.9 123 56.9
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 2.8e-27 125.6 122 60.7
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.6e-27 125.2 124 56.5
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 3.6e-27 125.2 126 56.3
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 6.1e-27 124.4 123 56.1
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 8.0e-27 124.0 126 57.9
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.0e-26 123.6 123 55.3
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.4e-26 123.2 125 58.4
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.3e-26 122.5 127 56.7
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.3e-26 122.5 123 55.3
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 3.0e-26 122.1 123 55.3
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 5.2e-26 121.3 124 59.7
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 6.8e-26 120.9 131 58.0
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 8.9e-26 120.6 130 56.9
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 2.6e-25 119.0 124 54.8
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 2.6e-25 119.0 126 55.6
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 3.4e-25 118.6 151 49.0
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 5.8e-25 117.9 130 57.7
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 5.8e-25 117.9 128 54.7
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 7.5e-25 117.5 126 53.2
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.8e-25 117.1 129 53.5
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 9.8e-25 117.1 126 54.0
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.3e-24 116.7 126 52.4
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.3e-24 116.7 121 55.4
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.3e-24 116.7 134 53.7
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 2.2e-24 115.9 125 56.0
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.2e-24 115.9 130 56.2
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 2.2e-24 115.9 126 55.6
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 2.9e-24 115.5 110 57.3
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 3.7e-24 115.2 120 55.8
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 3.7e-24 115.2 126 53.2
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 6.4e-24 114.4 126 52.4
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 6.4e-24 114.4 124 53.2
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 6.4e-24 114.4 129 54.3
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 8.3e-24 114.0 126 54.0
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 1.1e-23 113.6 130 55.4
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.1e-23 113.6 123 51.2
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.4e-23 113.2 126 53.2
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.9e-23 112.8 125 55.2
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 1.9e-23 112.8 125 54.4
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 4.1e-23 111.7 123 50.4
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 5.4e-23 111.3 125 56.8
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 5.4e-23 111.3 125 52.0
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 9.2e-23 110.5 105 60.0
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 1.2e-22 110.2 125 51.2
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 3.5e-22 108.6 123 52.8
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 4.6e-22 108.2 120 50.0
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 4.6e-22 108.2 126 50.0
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 7.8e-22 107.5 129 51.9
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 3.0e-21 105.5 98 58.2
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 6.6e-21 104.4 126 51.6
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 1.5e-20 103.2 123 49.6
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 1.5e-20 103.2 125 53.6
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 1.9e-20 102.8 132 47.7
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 1.9e-20 102.8 121 50.4
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 3.3e-20 102.1 125 51.2
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 5.6e-20 101.3 122 52.5
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 9.5e-20 100.5 121 51.2
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 9.5e-20 100.5 130 50.8
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 1.2e-19 100.1 124 49.2
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 1.2e-19 100.1 132 49.2
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 1.6e-19 99.8 138 44.2
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.6e-19 99.8 138 44.2
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 1.6e-19 99.8 124 49.2
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 1.6e-19 99.8 121 47.1
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 2.1e-19 99.4 124 48.4
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 2.1e-19 99.4 124 48.4
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.1e-19 99.4 82 62.2
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.8e-19 99.0 122 51.6
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 2.8e-19 99.0 125 47.2
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.6e-19 98.6 127 47.2
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 8.0e-19 97.4 129 50.4
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.1e-18 97.1 131 47.3
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 1.4e-18 96.7 88 59.1
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.8e-18 96.3 85 57.6
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.8e-18 96.3 126 48.4
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 2.3e-18 95.9 126 48.4
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 3.1e-18 95.5 128 49.2
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 3.1e-18 95.5 147 44.2
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 3.1e-18 95.5 100 54.0
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 5.2e-18 94.7 88 58.0
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 8.9e-18 94.0 127 51.2
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 2.0e-17 92.8 119 45.4
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 2.0e-17 92.8 101 54.5
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.0e-17 92.8 126 46.8
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 7.5e-17 90.9 124 46.8
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 1.7e-16 89.7 135 43.0
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 2.2e-16 89.4 131 45.8
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 2.9e-16 89.0 127 44.9
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 3.7e-16 88.6 128 45.3
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 3.7e-16 88.6 119 47.1
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 6.4e-16 87.8 91 52.7
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.1e-15 87.0 127 44.9
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 1.4e-15 86.7 127 44.9
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 3.2e-15 85.5 91 51.6
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 3.2e-15 85.5 91 51.6
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 4.1e-15 85.1 110 43.6
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 7.0e-15 84.3 97 48.5
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 3.5e-14 82.0 97 47.4
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 4.6e-14 81.6 128 44.5
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 4.6e-14 81.6 73 63.0
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 4.6e-14 81.6 119 46.2
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 7.8e-14 80.9 98 53.1
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 7.8e-14 80.9 125 44.0
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 7.8e-14 80.9 69 58.0
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.3e-13 80.1 72 62.5
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 3.0e-13 79.0 112 47.3
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 8.6e-13 77.4 119 41.2
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 2.5e-12 75.9 89 50.6
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 3.3e-12 75.5 118 41.5
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 5.6e-12 74.7 127 42.5
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 5.6e-12 74.7 127 42.5
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 5.6e-12 74.7 127 42.5
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 5.6e-12 74.7 127 42.5
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 5.6e-12 74.7 127 42.5
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 5.6e-12 74.7 98 48.0
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 5.6e-12 74.7 123 39.8
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 7.3e-12 74.3 119 40.3
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 1.2e-11 73.6 120 40.0
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 3.6e-11 72.0 122 39.3
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 6.2e-11 71.2 98 53.1
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 1.8e-10 69.7 80 47.5
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 4.0e-10 68.6 124 40.3
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 4.0e-10 68.6 139 36.7
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 1.5e-09 66.6 104 41.3


User provided reference genes

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