Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.1e-126 455.7 225 100.0
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 6.1e-110 401.0 225 87.6
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 9.8e-108 393.7 223 85.2
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.4e-106 389.8 225 84.0
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.4e-106 389.0 225 83.6
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 3.1e-106 388.7 225 85.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.2e-105 386.7 225 83.1
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 5.9e-105 384.4 226 84.5
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 82.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 8.6e-104 380.6 225 80.9
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 84.0
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 83.6
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 80.9
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.0e-101 373.6 225 80.9
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 80.4
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 80.9
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 79.1
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 80.4
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 80.4
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 78.2
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.9e-99 365.5 226 81.4
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.9e-99 365.5 226 81.4
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 78.2
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 79.1
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.4e-98 362.5 225 77.8
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.2e-98 362.1 266 71.1
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.4e-98 361.3 224 79.5
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 78.7
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 77.3
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 76.0
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 3.5e-97 358.6 225 75.6
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 76.4
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 74.7
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 77.3
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 76.9
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 8.6e-96 354.0 225 74.2
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.5e-95 353.2 224 77.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 75.6
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 75.6
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 77.3
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 74.7
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.9
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 75.1
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 9.5e-95 350.5 225 74.7
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.5e-95 350.5 225 74.2
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 76.9
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 75.1
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 74.7
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 3.6e-94 348.6 226 74.8
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 75.1
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 76.4
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 74.7
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 76.0
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 72.9
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 76.0
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 5.2e-93 344.7 223 74.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 74.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 8.9e-93 344.0 225 74.7
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 76.4
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 74.2
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 9.8e-92 340.5 225 73.3
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.9e-91 338.2 226 73.9
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 5.4e-90 334.7 197 82.2
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.2e-89 333.6 225 72.4
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 4.6e-89 331.6 279 61.3
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 73.8
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 72.0
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.3e-88 330.1 228 72.8
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 72.0
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 72.0
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.7e-88 329.7 203 80.3
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 5.0e-88 328.2 225 71.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.1
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 71.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.5e-87 326.6 225 71.1
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.5e-87 325.9 220 72.3
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 70.7
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 3.3e-87 325.5 260 64.6
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 70.2
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 7.3e-87 324.3 225 72.0
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.2e-86 323.6 217 73.7
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 69.3
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 8.1e-86 320.9 225 69.3
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.1e-85 320.5 208 75.5
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.5e-84 316.6 225 68.4
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 9.8e-84 313.9 225 68.9
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 68.4
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 67.6
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 68.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 68.4
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 9.2e-82 307.4 225 67.6
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 68.0
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.0e-80 303.9 232 65.1
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 3.0e-80 302.4 226 67.3
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.1e-79 300.4 227 66.1
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.1e-79 300.4 227 65.6
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.5e-79 300.1 228 65.8
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 7.3e-79 297.7 225 66.2
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 7.3e-79 297.7 225 70.2
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 2.8e-78 295.8 225 67.1
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 6.2e-78 294.7 225 64.9
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 8.1e-78 294.3 225 65.3
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 8.1e-78 294.3 225 66.7
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.8e-77 293.1 225 64.9
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 3.1e-77 292.4 225 63.6
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 8.4e-75 284.3 177 76.3
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 7.8e-73 277.7 225 61.3
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 8.1e-70 267.7 226 61.9
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.4e-69 266.9 227 59.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.8e-69 266.5 225 63.6
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.2e-68 263.8 227 59.9
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-68 263.8 252 57.1
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.2e-68 263.8 252 57.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 4.6e-65 251.9 210 59.5
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 6.6e-64 248.1 229 60.7
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.6e-64 248.1 174 69.5
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.5e-63 246.1 243 54.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.6e-62 243.4 250 56.8
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.5e-60 236.9 225 52.9
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.7e-59 233.4 225 52.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.5e-55 220.3 225 51.1
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.8e-53 213.4 164 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 9.0e-53 211.1 225 48.9
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.5e-44 183.7 215 45.1
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.5e-44 182.2 122 68.9
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.9e-42 176.8 232 44.0
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 4.2e-42 175.6 228 43.4
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 4.5e-36 155.6 130 61.5
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.1e-34 151.0 150 54.7
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-34 150.2 100 72.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-34 150.2 100 72.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.2e-33 147.5 195 45.1
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.9e-24 115.9 72 72.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.7e-20 101.7 51 90.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.7e-20 101.7 51 90.2
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-19 100.5 51 90.2
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.7e-19 100.5 105 54.3
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.8e-19 99.4 57 84.2
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.4e-18 97.4 79 64.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 6.1e-17 92.0 65 60.0
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 8.8e-16 88.2 122 47.5
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 2.6e-15 86.7 78 53.8
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 7.4e-15 85.1 71 64.8
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.1e-13 79.3 223 30.9
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.1e-13 78.2 51 78.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.2e-12 77.8 51 72.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.1e-10 71.2 51 70.6
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 6.1e-09 65.5 56 58.9
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 1.1e-07 61.2 59 50.8


User provided reference genes

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