Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.9e-193 678.3 331 100.0
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.3e-120 435.6 278 71.9
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.0e-118 428.7 334 64.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 4.5e-117 425.2 385 57.1
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 4.9e-116 421.8 331 61.3
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.7e-114 416.0 332 60.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 6.0e-114 414.8 323 63.5
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 4.0e-110 402.1 323 61.6
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.0e-110 401.0 318 60.4
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 9.0e-110 401.0 322 60.9
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.5e-109 400.2 288 65.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.5e-109 400.2 341 58.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 2.6e-109 399.4 323 59.4
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.6e-109 399.4 315 60.6
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.6e-109 399.4 328 60.4
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.5e-109 398.7 315 59.7
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.9e-108 396.0 338 58.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 6.5e-108 394.8 322 61.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 8.4e-108 394.4 325 60.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.1e-107 394.0 387 51.9
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.2e-106 390.6 328 61.0
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-106 390.2 337 57.3
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.6e-106 390.2 325 60.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.6e-106 390.2 325 60.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.1e-106 389.8 290 61.4
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.1e-106 389.8 337 57.0
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.1e-106 389.8 280 63.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.7e-106 389.4 280 63.6
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.6e-106 388.7 300 61.3
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.6e-106 388.7 327 57.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 6.0e-106 388.3 330 60.9
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-105 387.5 333 59.2
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.8e-105 386.7 330 60.6
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.0e-105 386.0 322 58.4
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.0e-105 386.0 325 60.0
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 5.1e-105 385.2 324 61.1
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 5.1e-105 385.2 331 58.9
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.1e-105 385.2 323 57.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 8.7e-105 384.4 311 60.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.1e-104 384.0 318 58.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-104 383.3 328 57.9
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.3e-104 382.5 303 60.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 7.4e-104 381.3 325 58.2
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.6e-104 380.9 330 59.7
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 6.3e-103 378.3 322 59.0
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.3e-103 378.3 270 64.8
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.2e-103 377.9 279 63.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-102 377.5 326 57.7
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-102 377.5 281 63.7
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-102 377.5 324 57.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.8e-102 376.7 316 58.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.1e-102 375.9 264 65.2
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.1e-102 375.9 315 59.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-101 373.2 301 62.1
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.0e-101 373.2 329 56.8
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.6e-101 371.3 280 62.1
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.7e-100 370.2 316 56.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.7e-100 370.2 365 52.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.2e-100 369.8 314 59.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.9e-100 369.4 305 60.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.8e-100 369.0 364 54.1
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.5e-100 368.2 274 60.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 6.5e-100 368.2 325 56.3
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 8.4e-100 367.9 344 53.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 5.5e-99 365.2 320 58.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 7.2e-99 364.8 332 55.7
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 7.2e-99 364.8 332 55.7
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 9.3e-99 364.4 245 69.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.2e-98 364.0 322 56.8
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.6e-98 363.6 314 56.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 4.6e-98 362.1 321 56.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 4.6e-98 362.1 283 61.1
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 7.9e-98 361.3 304 60.9
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 7.9e-98 361.3 319 55.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.0e-97 360.9 322 56.2
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.3e-97 360.5 318 55.7
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.8e-97 360.1 255 64.7
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.3e-97 359.8 304 57.9
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.0e-97 359.4 323 56.0
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.9e-97 359.0 283 63.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 6.7e-97 358.2 321 56.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.1e-96 357.5 278 63.3
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.5e-96 357.1 308 59.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-96 357.1 256 63.3
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.9e-96 356.7 314 56.7
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.9e-96 356.7 367 51.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.3e-96 355.9 316 56.6
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 9.7e-96 354.4 278 59.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.7e-95 352.4 281 59.8
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.7e-95 352.4 252 63.9
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.8e-95 352.1 289 60.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 6.3e-95 351.7 288 61.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.1e-94 350.9 239 66.9
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.1e-94 349.4 260 67.3
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 5.3e-94 348.6 255 62.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 5.3e-94 348.6 253 62.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 5.3e-94 348.6 323 54.8
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 9.0e-94 347.8 331 54.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.0e-92 344.4 317 53.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.9e-92 342.8 272 58.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.8e-92 342.4 331 55.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 3.8e-92 342.4 276 58.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 5.0e-92 342.0 286 59.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.2e-91 339.3 320 53.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.2e-91 339.3 250 62.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.6e-90 335.9 284 56.0
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.1e-90 335.1 315 53.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.0e-89 334.3 328 52.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 8.2e-87 324.7 213 69.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 5.3e-86 322.0 292 56.2
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.3e-86 322.0 344 51.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 7.7e-85 318.2 258 60.1
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.1e-83 314.3 225 63.6
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.5e-83 312.0 317 49.2
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.7e-79 300.4 356 45.2
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 9.1e-78 294.7 330 51.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.3e-73 280.0 275 49.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.7e-73 278.5 190 68.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.6e-72 276.6 254 51.6
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.7e-72 275.4 237 55.3
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 4.1e-70 269.2 275 48.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 8.8e-65 251.5 234 49.6
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 7.5e-64 248.4 242 48.3
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 7.5e-64 248.4 242 48.3
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.5e-64 248.4 210 55.7
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.4e-62 242.3 210 54.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 8.5e-60 235.0 227 52.0
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.1e-59 234.6 193 59.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.5e-59 232.3 167 62.9
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.0e-57 228.0 213 54.9
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.3e-55 221.1 156 62.8
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 4.9e-55 219.2 282 39.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.1e-51 208.0 161 60.9
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.0e-49 199.9 213 48.4
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 8.9e-49 198.4 158 58.2
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 4.6e-45 186.0 269 36.4
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.7e-44 184.1 192 48.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 2.1e-42 177.2 154 54.5
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 9.8e-40 168.3 299 34.4
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.3e-39 165.2 195 45.1
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.4e-38 162.5 177 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 6.0e-37 159.1 206 43.2
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.3e-31 138.7 108 54.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 4.1e-30 136.3 139 51.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-29 134.8 143 49.7
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-21 107.8 277 28.9
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.9e-19 100.9 74 56.8
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.6e-19 99.4 75 57.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 7.3e-19 99.0 164 42.7
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.2e-18 95.9 76 59.2
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 6.2e-18 95.9 102 44.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.1e-17 93.6 78 64.1
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.1e-17 93.6 90 47.8
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.4e-14 82.8 121 40.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 4.0e-09 66.6 36 77.8
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.2e-06 56.6 190 26.3


User provided reference genes

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