Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.5e-98 362.1 179 100.0
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.3e-86 323.2 179 86.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 4.9e-86 321.2 179 88.3
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.4e-86 320.5 179 87.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-84 316.6 179 87.2
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.7e-84 315.5 179 87.7
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.5e-84 315.1 179 86.6
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 3.9e-83 311.6 179 85.5
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.8e-81 304.7 179 84.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 8.1e-81 303.9 179 84.4
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.8e-80 302.8 179 83.8
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.5e-79 299.7 179 78.8
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.6e-79 298.9 165 84.2
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.7e-78 296.2 157 91.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.2e-78 295.8 178 82.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.8e-78 295.0 179 80.4
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.4e-77 293.1 179 79.9
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.4e-77 293.1 179 81.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.5e-76 288.5 176 79.5
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.6e-76 288.1 173 80.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.0e-76 287.7 176 80.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.3e-75 285.8 178 79.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.6e-74 281.2 178 77.5
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 9.6e-74 280.4 178 74.7
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 9.6e-74 280.4 178 74.7
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.3e-73 280.0 178 75.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.3e-73 280.0 178 76.4
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.6e-73 279.6 168 80.4
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.6e-73 278.5 170 78.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.6e-73 278.5 174 77.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 4.8e-73 278.1 176 77.3
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.4e-72 276.6 178 77.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.8e-72 276.2 166 81.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.8e-72 276.2 178 77.0
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.1e-72 275.4 179 76.5
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 3.1e-72 275.4 155 83.9
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 3.1e-72 275.4 161 83.9
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.1e-72 275.4 176 77.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.9e-72 274.2 171 77.8
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 9.0e-72 273.9 151 86.1
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.0e-72 273.9 178 74.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.2e-71 273.5 171 77.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.0e-71 272.7 163 80.4
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.0e-71 272.7 178 76.4
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.6e-71 272.3 174 76.4
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.6e-71 272.3 178 76.4
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.4e-71 271.9 178 74.7
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 3.4e-71 271.9 151 85.4
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 4.5e-71 271.6 178 74.7
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.8e-71 271.2 151 84.8
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 5.8e-71 271.2 178 74.7
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 9.9e-71 270.4 151 84.8
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 9.9e-71 270.4 178 75.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 9.9e-71 270.4 178 74.2
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.7e-70 269.6 178 73.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.7e-70 269.6 166 77.7
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.4e-70 267.7 178 73.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 8.4e-70 267.3 178 75.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.4e-70 267.3 178 74.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.4e-70 267.3 178 74.2
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.4e-69 265.8 180 73.9
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 3.2e-69 265.4 179 74.9
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.2e-69 265.4 176 74.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.2e-69 265.0 178 73.6
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 5.4e-69 264.6 178 74.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.4e-69 264.6 151 82.1
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 5.4e-69 264.6 178 74.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 7.1e-69 264.2 178 74.7
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-68 263.5 160 80.0
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.2e-68 263.5 153 81.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.6e-68 263.1 169 76.9
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-68 263.1 151 84.1
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.7e-68 262.3 170 72.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.7e-68 262.3 170 73.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.7e-68 262.3 163 77.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 4.6e-68 261.5 179 73.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 4.6e-68 261.5 169 74.6
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.0e-68 261.2 153 79.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.0e-68 261.2 153 79.7
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 7.9e-68 260.8 178 73.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 7.9e-68 260.8 230 59.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 7.9e-68 260.8 178 73.6
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.0e-67 260.4 170 73.5
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.0e-67 260.4 153 79.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-67 260.4 153 79.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-67 260.4 153 79.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 72.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 72.4
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-67 260.0 170 72.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.3e-67 260.0 154 81.8
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.8e-67 259.6 171 71.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.8e-67 259.6 168 73.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-67 259.6 180 71.1
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-67 259.6 180 71.1
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.8e-67 259.6 178 73.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-67 259.6 153 78.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.3e-67 259.2 179 72.1
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.3e-67 259.2 151 80.8
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 3.9e-67 258.5 170 71.8
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 3.9e-67 258.5 170 71.8
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.9e-67 258.5 170 72.4
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.9e-67 258.5 153 79.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.9e-67 258.5 153 79.1
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 6.7e-67 257.7 151 79.5
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 6.7e-67 257.7 168 73.8
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 6.7e-67 257.7 168 73.8
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.7e-67 257.3 178 71.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.7e-67 257.3 170 72.4
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.1e-66 256.9 170 72.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-66 256.9 170 72.4
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 170 72.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 183 70.5
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.9e-66 256.1 168 73.2
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.9e-66 256.1 170 71.2
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.3e-66 255.0 183 69.4
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-66 255.0 179 71.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 9.6e-66 253.8 170 70.6
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 9.6e-66 253.8 148 81.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 9.6e-66 253.8 180 71.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 9.6e-66 253.8 182 70.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.1e-65 252.7 170 71.8
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.8e-65 252.3 174 70.7
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-65 251.9 151 77.5
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.7e-65 251.9 178 70.2
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 4.8e-65 251.5 182 69.2
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.1e-64 250.4 178 70.8
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.4e-64 250.0 152 75.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.4e-64 250.0 152 75.7
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.4e-64 249.2 160 73.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 9.0e-64 247.3 183 66.7
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.9e-62 242.3 170 70.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.9e-62 242.3 170 70.0
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.6e-60 236.5 159 70.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 6.0e-60 234.6 184 64.1
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.3e-59 232.6 154 72.1
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.3e-59 232.6 154 71.4
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.8e-57 225.7 168 64.3
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.7e-57 225.3 151 72.8
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-56 223.0 154 70.8
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.4e-53 213.4 135 76.3
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 4.6e-52 208.4 178 55.6
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.9e-51 205.3 136 73.5
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 2.5e-50 202.6 168 60.7
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.8e-49 199.1 132 72.0
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.9e-46 189.1 154 59.7
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 7.9e-44 181.0 111 73.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 6.7e-43 177.9 136 62.5
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.0e-42 176.4 107 84.1
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.5e-42 176.0 136 61.8
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.7e-41 172.2 152 60.5
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 8.2e-41 171.0 136 58.8
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.6e-39 166.0 135 56.3
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.4e-35 153.7 125 64.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.8e-33 145.2 165 53.9
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.8e-33 145.2 170 51.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.4e-32 142.9 120 55.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.9e-30 136.0 90 75.6
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.9e-30 136.0 88 78.4
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.6e-26 122.9 56 98.2
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.7e-26 120.9 91 63.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.8e-25 118.6 94 63.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.2e-25 117.9 126 43.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.4e-24 116.3 173 40.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.6e-23 112.8 118 45.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.6e-23 112.8 118 45.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.6e-20 103.6 71 69.0
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.0e-19 99.0 170 38.2
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.6e-18 96.3 71 62.0
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-18 95.5 66 62.1
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.8e-17 92.8 67 68.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 8.3e-17 91.3 100 45.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 8.3e-17 91.3 100 45.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.9e-15 85.1 52 76.9
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.7e-14 83.6 95 43.2
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.7e-12 76.3 76 43.4
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.8e-11 73.6 95 42.1
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 2.9e-06 56.2 97 37.1


User provided reference genes

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