Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 5.9e-175 617.5 318 100.0
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.2e-108 397.1 315 68.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.1e-93 347.4 339 58.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 4.9e-89 332.0 317 57.7
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 4.2e-88 328.9 308 58.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.6e-82 309.7 321 58.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-67 260.4 320 50.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 9.1e-67 258.1 321 50.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.2e-66 257.7 321 50.5
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.7e-61 238.8 322 44.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.4e-61 238.4 322 44.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.7e-60 237.3 336 47.0
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.2e-56 223.0 301 47.8
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.5e-56 222.2 323 44.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-55 221.1 312 44.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.1e-55 220.3 323 44.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.8e-52 209.9 322 40.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-51 205.3 325 44.0
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 5.5e-48 195.7 325 42.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.6e-47 194.1 324 41.4
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.7e-47 193.4 324 42.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-47 193.0 323 42.4
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.8e-46 190.7 328 41.2
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.0e-46 189.5 319 39.5
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.2e-45 188.0 324 38.6
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.6e-45 186.8 325 39.1
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.4e-45 186.0 325 37.8
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.7e-45 185.7 332 39.2
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 4.8e-44 182.6 310 39.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.3e-44 182.2 319 37.3
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.4e-43 180.3 317 36.9
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 9.1e-43 178.3 329 38.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.6e-42 177.6 322 38.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.0e-42 177.2 331 39.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.7e-42 175.3 317 38.8
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.9e-41 173.3 330 40.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 6.5e-41 172.2 320 40.3
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-40 171.4 331 42.6
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.9e-40 170.6 326 39.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.5e-40 170.2 331 42.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.5e-40 170.2 312 40.4
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.5e-40 169.1 318 40.9
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 7.2e-40 168.7 313 37.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 9.4e-40 168.3 325 38.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.6e-39 167.5 330 42.1
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.1e-39 167.2 313 36.7
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.7e-39 166.8 310 39.0
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.0e-39 165.2 332 41.9
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.0e-38 164.9 325 39.1
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.8e-38 164.1 326 40.2
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.3e-38 163.7 348 38.5
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.2e-36 157.1 334 38.6
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.7e-36 156.4 320 37.2
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 3.7e-36 156.4 324 37.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.1e-35 154.8 325 34.5
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.0e-34 150.6 317 35.0
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.0e-34 150.6 311 35.7
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.0e-33 148.3 313 38.3
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.3e-33 147.9 326 36.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 3.8e-33 146.4 260 41.2
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.0e-33 146.0 233 39.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.0e-33 146.0 326 33.7
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 6.6e-33 145.6 322 35.4
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.6e-33 145.6 329 34.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 4.2e-32 142.9 339 35.7
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.2e-32 142.9 330 33.9
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.2e-32 142.1 318 33.0
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.5e-32 141.7 328 34.1
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.6e-31 141.0 317 35.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.6e-31 141.0 328 34.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.8e-31 140.2 316 31.6
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.0e-30 138.3 328 32.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.8e-30 137.5 340 32.4
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 2.3e-30 137.1 329 34.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.0e-30 136.3 340 36.2
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-29 134.8 324 35.5
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-29 134.8 324 35.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-29 134.8 325 35.7
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.5e-29 134.4 331 34.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.5e-29 134.4 322 35.4
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.4e-29 132.9 331 32.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.4e-29 132.9 341 35.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.4e-29 132.9 333 36.3
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 5.7e-29 132.5 331 33.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 7.5e-29 132.1 339 35.7
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 7.5e-29 132.1 324 35.5
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 7.5e-29 132.1 324 35.5
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 7.5e-29 132.1 332 35.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 4.9e-28 129.4 340 34.1
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.9e-28 129.4 278 35.6
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-27 128.3 342 34.5
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.1e-27 126.7 339 33.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 3.1e-27 126.7 337 34.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.1e-27 126.7 336 34.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.1e-27 126.3 316 31.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.1e-27 126.3 315 30.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.7e-25 120.9 262 38.5
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.7e-25 120.9 333 36.3
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.3e-25 120.6 314 35.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.3e-25 120.6 323 34.1
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.9e-25 120.2 304 33.9
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 6.6e-25 119.0 335 32.8
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.5e-24 117.1 311 31.8
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.3e-24 116.7 325 33.5
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.3e-24 116.3 339 33.0
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.3e-24 116.3 329 33.4
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.2e-23 114.8 332 31.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.6e-23 114.4 329 30.7
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.8e-23 113.6 334 32.9
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.8e-23 113.6 312 31.4
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.6e-23 113.2 330 31.5
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.4e-22 111.3 326 33.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 8.9e-22 108.6 311 31.8
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 8.9e-22 108.6 313 28.8
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 5.8e-21 105.9 210 38.6
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.2e-20 104.0 322 31.4
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 6.4e-20 102.4 320 32.8
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-19 100.9 301 32.2
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.4e-19 100.5 301 31.2
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.7e-18 97.1 308 29.5
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.0e-18 95.9 310 30.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.3e-17 94.7 314 27.1
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 2.3e-17 94.0 207 32.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.0e-17 93.6 317 27.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.0e-17 93.6 320 29.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 6.6e-17 92.4 280 31.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.6e-17 92.0 309 30.1
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.3e-16 89.7 308 29.5
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 5.6e-16 89.4 299 28.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.8e-15 87.0 318 25.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.2e-15 85.9 308 27.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.2e-15 85.9 308 27.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 8.0e-15 85.5 308 27.6
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.1e-14 83.6 271 31.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 8.9e-14 82.0 308 28.9
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-13 81.6 315 27.6
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-13 81.3 318 27.0
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.4e-13 80.1 320 26.9
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.8e-13 79.3 170 37.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.2e-12 77.4 290 32.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.9e-11 74.3 203 33.5
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.9e-11 74.3 244 32.0
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.2e-10 71.6 145 35.9
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.6e-10 71.2 295 31.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.7e-10 70.5 180 30.0
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 6.0e-10 69.3 78 39.7
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.0e-10 69.3 181 30.4
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 3.0e-09 67.0 134 37.3
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.9e-09 66.6 137 34.3
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 8.6e-09 65.5 177 32.2
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-07 61.6 299 28.8
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 1.1e-06 58.5 203 30.0


User provided reference genes

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