Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 2.0e-141 505.8 256 100.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.4e-86 322.8 258 72.5
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.2e-74 283.9 264 62.5
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.4e-73 280.4 269 61.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-70 270.8 267 59.2
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-70 270.8 267 59.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.1e-70 268.9 260 64.2
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-69 267.3 266 58.6
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.1e-69 266.5 268 57.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.5e-67 260.4 231 68.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.3e-67 259.2 275 57.5
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 9.5e-67 257.7 270 56.3
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 2.1e-66 256.5 269 57.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.1e-65 254.2 266 59.0
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-65 253.1 266 56.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.4e-64 248.8 266 55.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.8e-64 248.4 260 55.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 8.3e-63 244.6 264 55.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 8.3e-63 244.6 268 55.2
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.1e-62 244.2 259 59.1
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.7e-60 236.9 272 55.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.9e-60 235.7 268 53.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.6e-60 235.0 277 55.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.9e-59 233.4 253 56.9
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.3e-59 232.6 277 54.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.3e-59 232.6 254 60.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.3e-59 231.5 275 53.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 9.5e-59 231.1 270 53.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.6e-58 230.3 258 55.8
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.1e-58 229.9 255 54.5
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.1e-58 229.9 255 54.5
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-57 227.3 255 54.1
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.1e-57 226.1 274 53.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.5e-56 223.8 248 54.4
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.0e-56 223.4 292 51.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.3e-55 220.7 286 51.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.1e-54 217.6 272 53.7
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.4e-54 217.2 268 52.2
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.9e-54 216.9 276 49.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.4e-54 215.3 297 50.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.6e-53 213.8 233 54.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.1e-53 213.4 266 52.3
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-52 211.1 259 51.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.3e-52 210.7 272 54.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.0e-52 209.5 235 54.9
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.0e-48 196.8 257 51.4
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 3.4e-48 196.1 255 51.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.4e-48 196.1 281 49.5
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.8e-48 195.3 213 55.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 5.8e-48 195.3 266 53.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 5.8e-48 195.3 271 47.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 7.6e-48 194.9 239 51.9
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.8e-47 192.6 270 50.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.8e-47 192.6 241 51.0
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 8.4e-47 191.4 273 49.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.4e-46 190.7 260 51.5
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.2e-46 189.5 260 46.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.6e-45 187.2 248 52.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.7e-45 186.4 299 48.5
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.7e-45 186.4 258 48.4
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-44 184.1 233 52.4
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.9e-44 182.6 245 45.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.9e-44 182.6 246 50.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.1e-43 181.0 276 47.1
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.3e-43 179.5 258 47.3
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 4.3e-43 179.1 242 49.2
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 3.6e-42 176.0 207 51.2
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 4.8e-42 175.6 228 51.3
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.0e-41 172.6 212 53.3
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.4e-40 169.5 272 45.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.6e-40 168.3 166 62.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 7.6e-40 168.3 246 47.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.7e-39 167.2 257 47.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.4e-39 165.2 261 47.1
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-38 164.5 234 49.1
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.1e-38 164.5 235 50.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 4.2e-38 162.5 245 46.1
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 4.2e-38 162.5 259 49.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 7.1e-38 161.8 275 44.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.3e-38 161.4 286 43.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.3e-38 161.4 286 43.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.5e-37 159.5 252 46.8
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-37 159.1 291 42.3
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.8e-36 157.1 229 52.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.8e-36 157.1 232 52.2
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.9e-36 156.0 249 46.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 8.7e-36 154.8 229 52.4
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.3e-34 151.0 265 43.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-34 149.4 225 48.9
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 4.8e-34 149.1 225 49.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.8e-34 149.1 253 48.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.2e-34 148.7 274 40.5
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 8.1e-34 148.3 234 46.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.1e-33 147.9 205 45.4
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.4e-33 147.5 278 40.3
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.4e-33 146.7 239 45.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.4e-33 146.7 239 45.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.9e-33 145.2 134 64.2
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.9e-33 145.2 241 47.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-32 144.4 238 45.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-32 144.1 238 46.6
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-32 142.5 248 44.8
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 4.9e-31 139.0 197 52.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.9e-31 139.0 244 40.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 8.4e-31 138.3 195 48.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 8.4e-31 138.3 202 45.5
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 9.3e-30 134.8 195 50.3
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.6e-29 134.0 285 41.8
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.7e-29 133.3 197 46.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.5e-29 132.9 257 41.2
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.0e-29 132.1 233 43.3
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 6.0e-29 132.1 254 40.6
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-28 131.3 249 41.8
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.3e-28 131.0 263 41.8
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.3e-28 130.2 246 42.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 5.1e-28 129.0 162 50.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 6.7e-28 128.6 248 42.7
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.7e-28 128.3 222 43.2
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.9e-27 127.1 78 82.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.9e-27 127.1 160 50.6
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.4e-25 120.2 221 43.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.1e-25 119.8 233 41.6
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 4.0e-25 119.4 180 49.4
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 5.8e-24 115.5 230 45.2
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 5.8e-24 115.5 231 43.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 7.6e-24 115.2 227 40.5
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.0e-23 114.8 194 45.9
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.0e-23 114.8 87 67.8
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-23 114.4 86 68.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 3.8e-23 112.8 241 40.7
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 6.5e-23 112.1 150 50.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 8.4e-23 111.7 240 38.8
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.1e-22 111.3 223 38.6
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 2.5e-22 110.2 244 40.2
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 4.6e-21 105.9 222 40.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 4.6e-21 105.9 222 40.5
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-20 104.0 234 41.0
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 3.3e-19 99.8 190 44.2
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 9.0e-17 91.7 265 38.5
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 9.0e-17 91.7 200 43.5
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.8e-12 77.4 236 39.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 6.7e-12 75.5 81 49.4
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.1e-11 74.7 226 35.0
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.1e-11 74.7 211 36.0
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.0e-11 73.9 183 38.8
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.5e-11 73.6 186 38.7
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.2e-10 70.5 61 57.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.7e-10 69.7 61 57.4
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 4.8e-10 69.3 99 50.5
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.8e-09 67.4 61 54.1
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.1e-09 66.2 158 34.2
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.3e-09 65.9 95 38.9
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 4.5e-08 62.8 131 39.7
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 4.5e-08 62.8 147 36.7
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 5.9e-08 62.4 172 32.0
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 1.3e-07 61.2 168 38.1
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.2e-07 60.5 230 29.1
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.9e-07 60.1 67 43.3
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 6.5e-07 58.9 89 42.7
Zm00001eb300220 Zea mays HOM05D000333 ORTHO05D000190 1.4e-06 57.8 112 36.6
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.5e-06 57.0 56 51.8
Rhsim03G0264000 Rhododendron simsii HOM05D000333 ORTHO05D000190 4.2e-06 56.2 70 41.4
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 4.2e-06 56.2 41 61.0
SGA_v2.0_scaffold36G14538 Striga asiatica HOM05D004123 ORTHO05D004768 5.5e-06 55.8 180 32.2
CANSAT11G1565 Cannabis sativa HOM05D000333 ORTHO05D000190 7.2e-06 55.5 87 37.9


User provided reference genes

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