Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 2.3e-114 415.6 214 100.0
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 3.2e-31 139.4 229 40.6
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.1e-20 104.4 180 38.9
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 4.0e-18 95.9 174 35.1
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 5.2e-18 95.5 246 32.1
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 6.8e-18 95.1 99 50.5
Lsat_1_v5_gn_8_31300 Lactuca sativa HOM05D006281 ORTHO05D005138 9.9e-17 91.3 189 30.2
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 1.3e-16 90.9 205 34.6
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 4.9e-16 89.0 204 35.3
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 6.4e-16 88.6 221 33.5
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 8.4e-16 88.2 95 54.7
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 8.4e-16 88.2 103 47.6
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 1.1e-15 87.8 196 37.2
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 1.9e-15 87.0 67 62.7
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 2.4e-15 86.7 205 34.1
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 2.4e-15 86.7 189 38.1
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.4e-15 86.7 205 34.6
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 4.1e-15 85.9 77 59.7
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 5.4e-15 85.5 213 31.9
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 5.4e-15 85.5 58 70.7
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 7.1e-15 85.1 203 34.0
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 1.6e-14 84.0 194 32.5
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 1.6e-14 84.0 92 52.2
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 1.6e-14 84.0 69 58.0
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 1.6e-14 84.0 69 60.9
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 2.1e-14 83.6 226 30.1
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 2.1e-14 83.6 197 34.5
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 3.5e-14 82.8 67 65.7
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 3.5e-14 82.8 203 32.0
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 4.6e-14 82.4 69 60.9
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 4.6e-14 82.4 190 33.7
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 6.0e-14 82.0 205 32.2
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 6.0e-14 82.0 94 48.9
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 6.0e-14 82.0 94 48.9
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 1.0e-13 81.3 68 63.2
unitig_0.g237 Utricularia gibba HOM05D062541 ORTHO05D005138 1.0e-13 81.3 167 35.9
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 1.3e-13 80.9 197 32.5
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 1.3e-13 80.9 74 58.1
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.7e-13 80.5 175 36.0
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 2.3e-13 80.1 193 34.7
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 2.3e-13 80.1 167 37.1
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 3.0e-13 79.7 182 34.6
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 3.0e-13 79.7 96 49.0
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 3.0e-13 79.7 68 58.8
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 3.9e-13 79.3 209 32.1
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 3.9e-13 79.3 66 57.6
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 5.1e-13 79.0 99 44.4
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 6.6e-13 78.6 67 58.2
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 6.6e-13 78.6 70 58.6
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 8.6e-13 78.2 85 49.4
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 8.6e-13 78.2 235 29.8
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 8.6e-13 78.2 66 56.1
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 8.6e-13 78.2 58 69.0
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 1.1e-12 77.8 67 58.2
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 1.1e-12 77.8 71 60.6
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 1.1e-12 77.8 66 59.1
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 1.5e-12 77.4 107 35.5
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 1.5e-12 77.4 79 57.0
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 1.5e-12 77.4 199 28.6
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.5e-12 77.4 184 32.1
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 1.9e-12 77.0 67 61.2
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 2.5e-12 76.6 207 30.9
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 2.5e-12 76.6 66 57.6
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 3.3e-12 76.3 128 42.2
PSO339G5625 Papaver somniferum HOM05D006281 ORTHO05D005138 3.3e-12 76.3 70 57.1
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 5.6e-12 75.5 88 45.5
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 5.6e-12 75.5 96 43.8
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 7.3e-12 75.1 208 29.3
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 7.3e-12 75.1 203 30.5
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 7.3e-12 75.1 66 50.0
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 7.3e-12 75.1 210 32.9
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 1.2e-11 74.3 213 29.6
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 1.2e-11 74.3 68 48.5
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 1.2e-11 74.3 61 62.3
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 1.2e-11 74.3 68 61.8
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 1.6e-11 73.9 118 33.1
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 2.8e-11 73.2 90 36.7
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 2.8e-11 73.2 88 43.2
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 3.6e-11 72.8 206 34.0
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 3.6e-11 72.8 216 29.6
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 3.6e-11 72.8 184 30.4
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 3.6e-11 72.8 66 59.1
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 4.7e-11 72.4 71 59.2
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 4.7e-11 72.4 211 28.0
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 6.2e-11 72.0 179 35.2
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 6.2e-11 72.0 209 29.7
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 8.1e-11 71.6 207 29.5
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 1.1e-10 71.2 79 48.1
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 1.1e-10 71.2 80 50.0
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 1.1e-10 71.2 62 48.4
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 1.4e-10 70.9 63 49.2
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 1.8e-10 70.5 88 45.5
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 2.4e-10 70.1 96 43.8
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 2.4e-10 70.1 205 30.2
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.1e-10 69.7 89 48.3
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 3.1e-10 69.7 60 58.3
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 4.0e-10 69.3 69 53.6
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.0e-10 69.3 69 55.1
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 4.0e-10 69.3 68 54.4
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 5.2e-10 68.9 69 53.6
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 6.9e-10 68.6 78 41.0
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 6.9e-10 68.6 52 65.4
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 6.9e-10 68.6 93 47.3
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 6.9e-10 68.6 72 51.4
Zm00001eb050110 Zea mays HOM05D006281 ORTHO05D005138 6.9e-10 68.6 170 27.6
Lj5g0023773 Lotus japonicus HOM05D006281 ORTHO05D005138 8.9e-10 68.2 93 46.2
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 8.9e-10 68.2 72 51.4
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 8.9e-10 68.2 190 28.9
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea HOM05D006281 ORTHO05D005138 1.2e-09 67.8 69 53.6
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 1.2e-09 67.8 71 47.9
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 1.2e-09 67.8 66 48.5
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.2e-09 67.8 68 52.9
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 1.5e-09 67.4 201 30.3
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 2.0e-09 67.0 69 55.1
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 2.6e-09 66.6 61 55.7
BcaC01g05445 Brassica carinata HOM05D010943 ORTHO05D005138 3.4e-09 66.2 68 47.1
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 3.4e-09 66.2 138 33.3
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 4.4e-09 65.9 66 48.5
C03p26630 Brassica napus HOM05D010943 ORTHO05D005138 4.4e-09 65.9 66 48.5
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 4.4e-09 65.9 66 48.5
Carub.0001s3571 Capsella rubella HOM05D010943 ORTHO05D005138 4.4e-09 65.9 68 44.1
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 4.4e-09 65.9 210 28.1
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 4.4e-09 65.9 69 53.6
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 5.8e-09 65.5 110 31.8
DCAR_032142 Daucus carota HOM05D006281 ORTHO05D005138 7.6e-09 65.1 142 33.8
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 7.6e-09 65.1 52 57.7
Carub.0004s2218 Capsella rubella HOM05D010943 ORTHO05D005138 9.9e-09 64.7 68 44.1
RcHm_v2.0_Chr1g0369781 Rosa chinensis HOM05D006281 ORTHO05D005138 1.7e-08 63.9 69 49.3
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 2.9e-08 63.2 73 49.3
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 2.9e-08 63.2 70 51.4
SEGI_11125 Sequoiadendron giganteum HOM05D006281 ORTHO05D005138 2.9e-08 63.2 74 45.9
BolC2t08666H Brassica oleracea HOM05D010943 ORTHO05D005138 3.8e-08 62.8 68 41.2
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 4.9e-08 62.4 63 49.2
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 4.9e-08 62.4 69 44.9
AL1G53000 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 6.4e-08 62.0 66 43.9
AT2G40020 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 8.4e-08 61.6 103 36.9
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 8.4e-08 61.6 69 49.3
Peaxi162Scf01313g00029 Petunia axillaris HOM05D000895 ORTHO05D000883 1.1e-07 61.2 173 32.4
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 1.4e-07 60.8 83 41.0
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.4e-07 60.1 82 42.7
GSVIVG01032854001 Vitis vinifera HOM05D043099 ORTHO05D005138 2.4e-07 60.1 241 26.6
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 3.2e-07 59.7 83 42.2
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 5.4e-07 58.9 83 42.2
PSO832G0699 Papaver somniferum HOM05D002788 ORTHO05D005138 5.4e-07 58.9 54 53.7
Haze_25248 Corylus avellana HOM05D006281 ORTHO05D005138 7.1e-07 58.5 66 40.9
BcaC03g15045 Brassica carinata HOM05D010943 ORTHO05D005138 9.3e-07 58.2 68 41.2
PSO013G0071 Papaver somniferum HOM05D002788 ORTHO05D005138 9.3e-07 58.2 85 43.5
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.2e-06 57.8 67 50.7
DCAR_027547 Daucus carota HOM05D000021 ORTHO05D035016 1.2e-06 57.8 123 34.1
BraA03t11475Z Brassica rapa HOM05D010943 ORTHO05D005138 6.0e-06 55.5 56 46.4
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 7.8e-06 55.1 64 45.3


User provided reference genes

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