Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.6e-124 449.5 243 100.0
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.9e-89 331.6 218 80.3
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.5e-87 325.5 206 77.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 6.7e-86 321.2 217 76.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 8.7e-86 320.9 212 75.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.9e-85 319.7 208 76.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.5e-85 319.3 227 77.1
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.3e-85 318.9 209 75.6
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.6e-85 318.2 195 79.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 9.6e-85 317.4 207 76.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.6e-85 317.4 195 79.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.6e-84 316.6 209 75.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 3.7e-84 315.5 218 72.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.2e-84 314.7 213 73.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 8.1e-84 314.3 208 74.0
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-83 313.9 207 75.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-83 313.9 208 75.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.8e-83 313.2 211 75.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.1e-83 312.4 207 74.9
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.0e-83 312.0 211 72.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 5.3e-83 311.6 207 74.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.0e-82 309.7 217 71.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 4.5e-82 308.5 213 74.6
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.5e-82 308.5 208 74.0
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.8e-82 308.1 207 74.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 5.8e-82 308.1 216 71.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.8e-82 308.1 210 72.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.6e-82 307.8 207 75.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 7.6e-82 307.8 207 75.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.6e-82 307.8 206 74.3
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-81 305.8 208 74.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.9e-81 305.8 208 74.0
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.9e-81 305.8 226 73.5
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.9e-81 305.1 208 72.6
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.9e-81 305.1 207 72.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.9e-81 305.1 209 74.6
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 4.9e-81 305.1 207 72.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.9e-81 305.1 207 73.4
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 6.4e-81 304.7 212 74.1
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.4e-81 304.7 208 73.6
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 8.4e-81 304.3 211 70.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-80 303.9 208 73.1
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.1e-80 303.9 211 71.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.9e-80 303.1 210 72.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-80 302.8 207 71.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.5e-80 302.8 207 71.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.5e-80 302.8 214 72.0
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.2e-80 302.4 213 69.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.2e-80 302.4 209 73.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.2e-80 302.4 209 73.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 5.5e-80 301.6 200 73.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 5.5e-80 301.6 241 67.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 5.5e-80 301.6 206 71.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.1e-80 301.2 200 72.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 7.1e-80 301.2 199 75.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.2e-79 300.4 207 75.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-79 300.4 207 73.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-79 300.4 207 73.4
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.2e-79 300.4 203 74.9
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.6e-79 300.1 203 72.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.1e-79 299.7 207 73.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-79 299.7 207 73.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.5e-79 298.9 207 73.4
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.5e-79 298.9 207 73.4
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 4.6e-79 298.5 207 72.9
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.0e-79 298.1 208 71.6
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 6.0e-79 298.1 207 73.9
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 7.9e-79 297.7 196 74.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-78 297.4 207 72.9
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.0e-78 295.8 192 74.5
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 6.7e-78 294.7 212 70.8
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 6.7e-78 294.7 212 70.8
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-77 293.9 213 69.0
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.5e-77 292.7 203 72.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 4.3e-77 292.0 210 68.6
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 5.6e-77 291.6 212 67.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.6e-77 291.6 209 67.9
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 9.6e-77 290.8 213 67.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.3e-76 290.4 211 68.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.3e-76 290.4 199 71.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.0e-73 280.8 212 64.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.3e-73 280.4 213 64.8
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.2e-73 279.6 205 67.3
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.9e-73 278.5 199 70.4
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 9.3e-72 274.2 197 70.1
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.7e-71 272.7 197 68.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.5e-71 272.3 220 72.3
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.3e-70 270.4 193 70.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.8e-70 270.0 192 70.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.0e-70 269.2 219 63.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.0e-70 269.2 211 64.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.1e-70 268.5 202 68.3
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.1e-70 268.5 202 68.3
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.5e-69 266.9 207 64.3
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.5e-69 266.2 194 68.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 5.7e-69 265.0 202 67.3
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.7e-69 265.0 202 67.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.7e-69 265.0 199 65.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-69 264.6 203 67.5
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-69 264.6 202 67.3
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-68 263.8 202 66.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.2e-68 263.1 202 67.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.2e-68 263.1 201 67.7
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.7e-68 262.3 196 67.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.8e-68 261.9 205 67.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 6.3e-68 261.5 199 68.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.3e-68 261.5 217 63.1
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 8.2e-68 261.2 196 67.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.4e-67 260.4 194 66.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.8e-67 260.0 199 68.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-67 260.0 203 66.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.8e-67 260.0 203 66.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.8e-67 260.0 203 66.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 5.3e-67 258.5 203 66.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 6.9e-67 258.1 203 66.0
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.4e-66 255.8 199 67.3
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-65 254.2 202 68.3
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.8e-65 252.3 202 67.8
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.5e-64 249.6 195 65.1
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 7.9e-63 244.6 186 62.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.4e-62 243.8 189 64.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.3e-61 239.2 188 66.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.2e-60 236.5 215 60.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-60 236.1 196 62.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.8e-59 233.4 211 62.6
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.0e-58 229.9 142 78.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 9.7e-53 211.1 158 69.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-52 210.3 163 68.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.1e-51 207.6 208 53.4
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.3e-49 200.7 203 56.7
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.5e-48 197.2 158 62.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.2e-47 194.1 120 79.2
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.6e-47 192.6 120 74.2
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 5.7e-45 185.3 108 78.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.8e-44 183.0 101 87.1
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.1e-43 179.1 201 51.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 3.8e-41 172.6 104 81.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.2e-37 161.0 127 66.1
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.9e-20 102.4 89 64.0
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.1e-15 87.0 80 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 9.5e-08 61.6 130 32.3
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 2.1e-07 60.5 175 27.4
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.1e-06 56.6 136 30.1
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.1e-06 56.6 136 30.1
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 5.2e-06 55.8 126 30.2


User provided reference genes

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