Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 3.8e-63 244.6 116 100.0
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 5.0e-47 191.0 102 86.3
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.1e-46 189.9 103 86.4
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.4e-46 189.5 102 86.3
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 1.9e-46 189.1 102 85.3
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.9e-46 189.1 102 85.3
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.5e-46 188.7 103 86.4
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 4.2e-46 188.0 103 85.4
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 5.5e-46 187.6 103 82.5
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 5.5e-46 187.6 102 86.3
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 1.2e-45 186.4 103 85.4
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 2.1e-45 185.7 102 84.3
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 2.1e-45 185.7 102 84.3
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 2.7e-45 185.3 103 82.5
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 3.6e-45 184.9 103 82.5
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 4.6e-45 184.5 102 84.3
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 4.6e-45 184.5 102 84.3
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 4.6e-45 184.5 102 84.3
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 4.6e-45 184.5 102 84.3
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 4.6e-45 184.5 103 82.5
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 4.6e-45 184.5 102 84.3
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 6.1e-45 184.1 103 82.5
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 7.9e-45 183.7 103 83.5
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 7.9e-45 183.7 101 84.2
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 1.0e-44 183.3 102 83.3
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 1.0e-44 183.3 103 83.5
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 1.0e-44 183.3 101 86.1
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 1.0e-44 183.3 103 81.6
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 1.0e-44 183.3 101 85.1
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 1.0e-44 183.3 103 84.5
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 1.4e-44 183.0 101 86.1
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.8e-44 182.6 103 84.5
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 1.8e-44 182.6 101 86.1
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 1.8e-44 182.6 101 86.1
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 2.3e-44 182.2 101 85.1
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 2.3e-44 182.2 101 85.1
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 2.3e-44 182.2 102 83.3
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 2.3e-44 182.2 101 84.2
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 2.3e-44 182.2 103 82.5
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 3.0e-44 181.8 101 82.2
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 3.0e-44 181.8 101 82.2
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.0e-44 181.8 103 82.5
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.0e-44 181.8 103 82.5
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 3.0e-44 181.8 103 82.5
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 3.0e-44 181.8 101 84.2
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 3.9e-44 181.4 103 79.6
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 3.9e-44 181.4 101 83.2
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 3.9e-44 181.4 101 83.2
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 5.1e-44 181.0 101 84.2
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.1e-44 181.0 103 83.5
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.1e-44 181.0 103 83.5
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 5.1e-44 181.0 103 83.5
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 5.1e-44 181.0 101 83.2
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 6.7e-44 180.6 101 84.2
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 6.7e-44 180.6 101 84.2
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 6.7e-44 180.6 101 82.2
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 6.7e-44 180.6 103 80.6
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 8.8e-44 180.3 103 84.5
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.1e-43 179.9 103 83.5
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.1e-43 179.9 101 85.1
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 1.1e-43 179.9 101 85.1
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 2.0e-43 179.1 102 81.4
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 2.0e-43 179.1 103 83.5
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.0e-43 179.1 103 82.5
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 2.5e-43 178.7 103 80.6
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 2.5e-43 178.7 103 80.6
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 3.3e-43 178.3 103 82.5
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 3.3e-43 178.3 103 82.5
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 4.3e-43 177.9 101 82.2
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 5.7e-43 177.6 101 84.2
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 7.4e-43 177.2 103 79.6
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 7.4e-43 177.2 103 82.5
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 9.7e-43 176.8 103 78.6
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 1.7e-42 176.0 101 79.2
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 1.7e-42 176.0 101 79.2
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 1.7e-42 176.0 103 81.6
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.7e-42 176.0 103 81.6
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.7e-42 176.0 103 81.6
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.7e-42 176.0 103 81.6
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.7e-42 176.0 103 82.5
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 2.2e-42 175.6 101 81.2
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 2.2e-42 175.6 101 82.2
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 2.2e-42 175.6 103 77.7
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 2.2e-42 175.6 103 77.7
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.8e-42 175.3 102 77.5
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 2.8e-42 175.3 103 79.6
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 2.8e-42 175.3 101 80.2
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 3.7e-42 174.9 97 84.5
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 3.7e-42 174.9 99 84.8
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 8.2e-42 173.7 103 77.7
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 2.4e-41 172.2 101 80.2
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 3.1e-41 171.8 103 79.6
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 4.1e-41 171.4 106 79.2
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 4.1e-41 171.4 101 81.2
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 5.3e-41 171.0 103 80.6
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 5.3e-41 171.0 101 79.2
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 9.1e-41 170.2 101 79.2
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 9.1e-41 170.2 97 83.5
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 1.2e-40 169.9 102 79.4
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 2.0e-40 169.1 101 79.2
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 5.9e-40 167.5 104 76.0
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.7e-39 166.0 104 75.0
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 3.8e-39 164.9 103 75.7
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 6.5e-39 164.1 101 76.2
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 3.2e-38 161.8 109 75.2
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 3.2e-38 161.8 103 74.8
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 3.2e-38 161.8 103 74.8
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 7.2e-38 160.6 103 71.8
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 9.4e-38 160.2 103 72.8
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 1.6e-37 159.5 102 72.5
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 6.1e-37 157.5 103 71.8
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 7.9e-37 157.1 103 71.8
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 2.3e-36 155.6 94 78.7
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 3.9e-36 154.8 131 61.1
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 5.7e-35 151.0 103 68.9
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 2.2e-34 149.1 108 62.0
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.8e-33 146.0 102 64.7
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 2.0e-32 142.5 105 61.0
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 5.9e-32 141.0 102 67.6
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 5.0e-31 137.9 79 79.7
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.5e-31 137.5 74 85.1
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 1.1e-30 136.7 106 63.2
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 1.9e-30 136.0 75 81.3
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.6e-29 132.9 74 82.4
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 2.1e-29 132.5 101 58.4
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 2.7e-29 132.1 92 72.8
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 2.7e-29 132.1 117 61.5
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 5.3e-25 117.9 95 62.1
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 7.0e-25 117.5 103 53.4
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.2e-24 116.7 74 66.2
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 1.6e-24 116.3 66 83.3
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 7.7e-24 114.0 63 84.1
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 2.1e-21 105.9 56 85.7
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 2.0e-19 99.4 100 43.0
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 1.4e-17 93.2 74 60.8
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 5.3e-17 91.3 88 46.6
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 3.5e-16 88.6 101 41.6
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 6.5e-15 84.3 105 36.2
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 8.5e-15 84.0 43 86.0
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 3.6e-13 78.6 42 83.3
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 3.6e-13 78.6 102 41.2
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 8.0e-13 77.4 42 83.3
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 1.8e-12 76.3 42 83.3
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 5.2e-12 74.7 41 80.5
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 7.5e-11 70.9 42 78.6
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 2.4e-09 65.9 44 72.7
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 1.9e-06 56.2 40 67.5


User provided reference genes

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