Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8228 Avicennia marina HOM05D001861 ORTHO05D031642 2.2e-199 698.7 354 100.0
SalBow6G0179 Salvia bowleyana HOM05D001861 ORTHO05D031642 8.4e-21 105.5 354 29.1
Oeu014533.1 Olea europaea HOM05D001861 ORTHO05D001868 9.2e-20 102.1 421 32.1
Gorai.007G274900 Gossypium raimondii HOM05D001861 ORTHO05D001868 2.1e-19 100.9 207 38.2
Migut.F01539 Erythranthe guttata HOM05D001861 ORTHO05D031642 3.5e-19 100.1 373 32.2
Gohir.D11G256600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 4.6e-19 99.8 205 37.6
Manes.08G140100 Manihot esculenta HOM05D001861 ORTHO05D001868 1.3e-18 98.2 345 29.6
Gohir.A11G246400 Gossypium hirsutum HOM05D001861 ORTHO05D001868 1.5e-17 94.7 209 36.8
Thecc.05G270000 Theobroma cacao HOM05D001861 ORTHO05D001868 7.3e-17 92.4 396 28.8
CSS0044247 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 2.4e-15 87.4 231 33.3
MD12G1249400 Malus domestica HOM05D001861 ORTHO05D001868 2.4e-15 87.4 395 30.4
Prupe.6G350800 Prunus persica HOM05D001861 ORTHO05D001868 5.3e-15 86.3 397 29.0
QL03p029819 Quercus lobata HOM05D001861 ORTHO05D001868 5.3e-15 86.3 412 27.7
Cc02_g08730 Coffea canephora HOM05D001861 ORTHO05D001868 1.5e-14 84.7 438 26.7
Duzib177G0739 Durio zibethinus HOM05D001861 ORTHO05D001868 2.6e-14 84.0 413 30.3
Eucgr.H04224 Eucalyptus grandis HOM05D001861 ORTHO05D001868 1.7e-13 81.3 217 32.7
Lj2A44T76 Lonicera japonica HOM05D001861 ORTHO05D001868 2.2e-13 80.9 216 33.3
Peaxi162Scf00155g00022 Petunia axillaris HOM05D001861 ORTHO05D020309 4.9e-13 79.7 373 30.6
Ciclev10021910m.g Citrus clementina HOM05D001861 ORTHO05D001868 6.4e-13 79.3 200 33.0
FAN05G5582 Fragaria x ananassa HOM05D001861 ORTHO05D001868 8.4e-13 79.0 385 28.6
Haze_04414 Corylus avellana HOM05D001861 ORTHO05D001868 1.9e-12 77.8 359 28.4
FvH4_6g01750 Fragaria vesca HOM05D001861 ORTHO05D001868 3.2e-12 77.0 387 28.9
FAN09G3342 Fragaria x ananassa HOM05D001861 ORTHO05D001868 3.2e-12 77.0 385 29.4
MD04G1231100 Malus domestica HOM05D001861 ORTHO05D001868 3.2e-12 77.0 386 28.8
FAN14G2355 Fragaria x ananassa HOM05D001861 ORTHO05D001868 5.4e-12 76.3 384 28.4
FAN14G5619 Fragaria x ananassa HOM05D001861 ORTHO05D001868 5.4e-12 76.3 385 28.6
arahy.Tifrunner.gnm1.ann1.M57DEN Arachis hypogaea HOM05D001861 ORTHO05D001868 2.1e-11 74.3 219 33.8
Cfa006362 Carpinus fangiana HOM05D001861 ORTHO05D001868 2.7e-11 73.9 364 28.0
Lalb_Chr04g0262111 Lupinus albus HOM05D001861 ORTHO05D001868 3.5e-11 73.6 206 33.0
COL.COLO4_15500 Corchorus olitorius HOM05D001861 ORTHO05D001868 4.6e-11 73.2 408 27.0
FAN05G0278 Fragaria x ananassa HOM05D001861 ORTHO05D001868 4.6e-11 73.2 390 27.9
HanXRQChr14g0454241 Helianthus annuus HOM05D001861 ORTHO05D001868 1.3e-10 71.6 215 32.6
HanXRQChr14g0455311 Helianthus annuus HOM05D001861 ORTHO05D001868 1.3e-10 71.6 215 32.6
AUR62040915 Chenopodium quinoa HOM05D001861 ORTHO05D001868 1.7e-10 71.2 213 32.9
Lj1g0025782 Lotus japonicus HOM05D001861 ORTHO05D001868 1.7e-10 71.2 219 32.4
arahy.Tifrunner.gnm1.ann1.1WV257 Arachis hypogaea HOM05D001861 ORTHO05D001868 2.3e-10 70.9 412 29.9
Sc20g0000700 Simmondsia chinensis HOM05D001861 ORTHO05D001868 3.9e-10 70.1 191 34.6
GSVIVG01023442001 Vitis vinifera HOM05D001861 ORTHO05D001868 8.7e-10 68.9 224 31.2
CANSAT54G0422 Cannabis sativa HOM05D001861 ORTHO05D001868 1.1e-09 68.6 397 26.7
TPR.G7006 Trifolium pratense HOM05D001861 ORTHO05D001868 1.5e-09 68.2 208 32.2
VMungo0540G1565 Vigna mungo HOM05D001861 ORTHO05D001868 1.5e-09 68.2 198 31.3
Potri.013G047700 Populus trichocarpa HOM05D001861 ORTHO05D001868 3.3e-09 67.0 402 26.9
RcHm_v2.0_Chr3g0449491 Rosa chinensis HOM05D001861 ORTHO05D001868 3.3e-09 67.0 396 26.8
ClCG11G010520 Citrullus lanatus HOM05D001861 ORTHO05D001868 7.3e-09 65.9 395 27.6
Glyma.03G250200 Glycine max HOM05D001861 ORTHO05D001868 9.6e-09 65.5 225 30.7
MELO3C008695.2 Cucumis melo HOM05D001861 ORTHO05D001868 1.6e-08 64.7 425 26.4
ECA238G0949 Erigeron canadensis HOM05D001861 ORTHO05D001868 1.6e-08 64.7 208 35.6
HanXRQChr07g0194821 Helianthus annuus HOM05D001861 ORTHO05D001868 2.1e-08 64.3 184 29.9
Sed0009743 Sechium edule HOM05D001861 ORTHO05D001868 2.8e-08 63.9 393 26.2
Cpa.g.sc306.5 Carica papaya HOM05D001861 ORTHO05D001868 3.6e-08 63.5 289 27.7
Atru.chr2.1000 Acer truncatum HOM05D001861 ORTHO05D001868 4.8e-08 63.2 410 28.5
CsaV3_2G009870 Cucumis sativus L. HOM05D001861 ORTHO05D001868 4.8e-08 63.2 396 28.3
PGR004G2436 Punica granatum HOM05D001861 ORTHO05D001868 6.2e-08 62.8 400 25.5
Sabra13G0043700 Salix brachista HOM05D001861 ORTHO05D001868 6.2e-08 62.8 391 28.1
Phvul.006G104900 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 1.1e-07 62.0 237 29.5
Nitab4.5_0010745g0010 Nicotiana tabacum HOM05D001861 ORTHO05D020309 1.4e-07 61.6 411 26.8
RhsimUnG0155600 Rhododendron simsii HOM05D001861 ORTHO05D001868 4.0e-07 60.1 157 32.5
Hund06903 Selenicereus undatus HOM05D001861 ORTHO05D001868 9.0e-07 58.9 390 26.7
CiPaw.07G073500 Carya illinoinensis HOM05D001861 ORTHO05D001868 1.5e-06 58.2 125 36.8
PSO832G1062 Papaver somniferum HOM05D001861 ORTHO05D001868 2.6e-06 57.4 222 30.2
THA.LOC104823758 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 2.6e-06 57.4 373 24.9
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 2.6e-06 57.4 410 25.1
Rhsim09G0134700 Rhododendron simsii HOM05D001861 ORTHO05D001868 3.4e-06 57.0 172 32.6
RhsimUnG0083600 Rhododendron simsii HOM05D001861 ORTHO05D001868 3.4e-06 57.0 174 32.8
PSO674G0045 Papaver somniferum HOM05D001861 ORTHO05D001868 4.5e-06 56.6 222 29.7
Glyma.19G247800 Glycine max HOM05D001861 ORTHO05D001868 7.6e-06 55.8 363 27.5
EL10Ac4g08993 Beta vulgaris HOM05D001861 ORTHO05D001868 9.9e-06 55.5 205 30.7


User provided reference genes

Program Settings