Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 0.0e+00 1454.5 842 100.0
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.2e-263 911.4 837 69.2
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.3e-253 880.2 849 65.8
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 4.9e-245 851.7 832 64.4
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 4.2e-228 795.4 850 61.5
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 9.7e-209 731.1 817 60.6
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.7e-200 703.7 834 57.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 2.8e-200 703.0 848 58.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.3e-197 694.1 832 58.8
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 5.5e-196 688.7 842 58.1
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 9.4e-196 688.0 832 56.5
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.1e-195 686.8 832 56.6
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 3.6e-195 686.0 828 57.0
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.0e-194 684.5 863 56.2
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.7e-192 676.0 862 52.7
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.7e-192 676.0 752 62.5
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 7.0e-191 671.8 828 56.2
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.2e-190 671.0 828 56.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.2e-190 671.0 826 54.6
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.0e-190 670.2 823 57.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 4.2e-188 662.5 841 55.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 2.2e-184 650.2 843 54.1
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.8e-184 649.8 851 53.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.0e-183 645.2 832 53.8
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 9.1e-183 644.8 867 50.6
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.7e-181 640.6 839 54.1
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 5.0e-181 639.0 834 53.4
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 8.5e-181 638.3 833 53.7
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.0e-177 627.1 820 53.3
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.4e-177 626.3 834 54.1
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.7e-177 625.5 833 53.3
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 2.2e-176 623.6 833 52.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 4.8e-176 622.5 844 52.1
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.1e-175 621.3 829 53.6
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.4e-175 620.2 902 48.2
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 3.5e-174 616.3 821 52.4
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.7e-174 615.1 833 52.3
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.8e-173 612.8 829 53.1
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 8.5e-173 611.7 809 53.4
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 9.4e-172 608.2 832 56.1
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.6e-171 607.4 829 53.9
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 6.1e-171 605.5 813 51.3
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 4.0e-170 602.8 799 55.3
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.8e-169 598.2 832 53.0
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.2e-168 597.0 821 50.1
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.8e-168 596.7 815 50.6
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.7e-168 596.3 832 52.9
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.4e-167 594.3 820 50.6
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 9.2e-167 591.7 831 49.9
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.7e-166 590.1 850 50.7
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.0e-165 588.2 817 47.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 2.3e-165 587.0 779 55.6
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 8.6e-165 585.1 854 51.1
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 8.6e-165 585.1 807 45.5
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.5e-164 584.3 828 52.2
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.9e-164 583.9 834 52.0
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 3.6e-163 579.7 845 50.8
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 6.1e-163 578.9 848 51.7
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.8e-162 577.4 845 49.5
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.8e-162 575.5 820 49.3
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 8.9e-162 575.1 818 45.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.5e-161 574.3 822 51.7
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 3.4e-161 573.2 800 45.8
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 5.7e-161 572.4 830 51.1
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 5.7e-161 572.4 862 50.3
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.9e-160 570.1 817 49.9
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 1.8e-159 567.4 809 46.8
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 5.4e-159 565.8 803 46.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 5.4e-159 565.8 766 51.8
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.6e-158 564.3 840 45.5
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 2.0e-158 563.9 830 44.9
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.3e-157 561.2 811 50.1
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 2.3e-157 560.5 821 51.8
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.0e-157 560.1 864 48.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.0e-157 560.1 820 48.0
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.9e-157 559.7 829 48.6
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.4e-154 551.2 829 46.9
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 2.0e-153 547.4 818 45.5
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.7e-152 544.3 848 47.8
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.7e-152 544.3 811 51.3
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 4.9e-152 542.7 855 44.1
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.9e-151 540.8 810 51.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 2.4e-151 540.4 818 44.4
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 7.0e-151 538.9 689 54.3
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 3.5e-150 536.6 798 45.2
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.0e-149 535.0 810 50.0
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 5.0e-149 532.7 807 49.1
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.1e-148 531.6 814 49.1
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.5e-148 531.2 807 48.8
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.2e-147 528.1 796 49.9
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.2e-147 528.1 676 55.2
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 1.4e-143 514.6 816 48.8
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.7e-141 507.7 686 54.2
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.1e-140 505.0 784 44.1
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.4e-137 493.0 818 46.2
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 5.8e-137 492.7 818 46.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.9e-135 487.6 819 44.7
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.9e-135 487.6 498 56.0
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 5.4e-135 486.1 819 44.6
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.5e-132 477.2 844 42.7
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.3e-117 428.3 899 40.3
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.2e-113 415.2 898 41.8
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 3.4e-113 413.7 898 39.2
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 4.5e-113 413.3 889 40.7
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 4.8e-107 393.3 817 43.2
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 2.4e-106 391.0 490 51.2
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.8e-104 383.6 754 45.5
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 2.5e-87 327.8 843 39.4
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.2e-87 327.4 609 48.9
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.1e-86 324.7 829 34.9
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 7.0e-66 256.5 506 37.5
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.9e-63 248.4 506 37.5
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 4.7e-62 243.8 253 55.3
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 6.8e-61 240.0 462 36.6
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.8e-58 231.9 589 32.3
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 6.3e-51 206.8 839 26.9
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 3.3e-47 194.5 840 29.4
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.0e-41 175.3 199 54.3
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 5.6e-39 167.2 706 33.6
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 2.8e-38 164.9 129 67.4
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 8.9e-37 159.8 451 32.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.7e-32 145.6 110 63.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 2.5e-31 141.7 192 42.2
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 4.3e-31 141.0 376 30.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 3.5e-25 121.3 220 35.9
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.4e-21 109.4 175 42.9
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 4.0e-21 107.8 128 46.1
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.4e-19 100.5 213 36.2
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 3.5e-17 94.7 159 40.9
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 5.6e-15 87.4 74 55.4
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.1e-10 73.2 205 28.8
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.3e-08 65.5 117 36.8
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 9.6e-07 60.1 160 35.0
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 1.6e-06 59.3 67 50.7
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 4.8e-06 57.8 61 50.8
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 6.2e-06 57.4 56 46.4


User provided reference genes

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