Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.9e-195 685.6 343 100.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 5.2e-161 571.2 334 86.2
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.1e-157 559.3 319 86.5
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-141 506.5 331 77.6
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.1e-141 506.1 331 76.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.0e-140 503.8 319 79.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-140 503.1 319 79.9
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.1e-140 501.5 319 78.1
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-139 500.4 319 79.3
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 7.3e-139 497.7 319 77.4
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 2.8e-138 495.7 356 73.3
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 6.9e-137 491.1 319 76.2
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 4.4e-136 488.4 312 77.9
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 4.4e-136 488.4 319 75.5
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 7.6e-136 487.6 319 76.8
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 9.9e-136 487.3 319 76.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.2e-135 486.1 306 77.8
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 2.2e-135 486.1 319 76.5
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.2e-135 486.1 330 73.6
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.9e-135 485.7 319 76.5
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.9e-135 485.7 319 76.8
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.9e-135 485.7 320 75.3
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.9e-135 485.7 374 67.6
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.9e-135 485.7 320 75.6
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 3.8e-135 485.3 306 78.4
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.8e-135 485.3 319 75.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 4.9e-135 485.0 306 76.5
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.1e-134 483.8 306 77.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.4e-134 483.4 318 74.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.9e-134 483.0 300 79.0
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.9e-134 483.0 320 75.9
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.9e-134 483.0 320 75.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.9e-134 483.0 306 78.1
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 3.2e-134 482.3 319 74.3
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.2e-134 482.3 320 77.2
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 9.3e-134 480.7 319 75.9
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.2e-133 480.3 319 74.9
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.1e-133 479.6 306 77.1
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.7e-133 479.2 319 75.5
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.6e-133 478.4 319 74.6
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 4.6e-133 478.4 320 75.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 6.0e-133 478.0 314 74.5
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 6.0e-133 478.0 319 74.9
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-133 477.6 318 76.7
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.3e-132 476.9 309 76.7
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.7e-132 476.5 306 78.4
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.7e-132 476.5 319 74.0
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 8.7e-132 474.2 319 74.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.9e-131 473.0 319 74.0
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 4.3e-131 471.9 307 74.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 4.3e-131 471.9 303 75.6
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 4.3e-131 471.9 324 74.1
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 4.3e-131 471.9 308 76.3
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.3e-131 471.9 385 65.5
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 3.6e-130 468.8 320 72.5
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.8e-130 468.4 283 82.0
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 4.8e-130 468.4 314 74.5
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 6.2e-130 468.0 300 77.0
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.4e-129 466.8 320 73.1
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.4e-129 466.8 314 74.5
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 2.4e-129 466.1 338 70.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.2e-128 463.8 335 71.0
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 2.0e-128 463.0 297 77.1
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.0e-128 463.0 299 76.3
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.6e-128 462.6 339 69.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.5e-128 461.8 300 75.7
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 4.5e-128 461.8 300 76.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.6e-128 461.1 300 75.3
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.3e-127 460.3 300 76.7
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.3e-127 460.3 316 71.2
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.7e-127 459.9 300 74.0
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 2.9e-127 459.1 283 79.5
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 4.9e-127 458.4 300 75.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 8.4e-127 457.6 306 75.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.4e-126 456.8 299 75.6
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-126 456.4 279 81.7
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 3.2e-126 455.7 319 71.8
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.6e-125 453.4 285 77.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.6e-125 453.4 369 66.7
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.0e-124 450.7 282 78.7
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 2.3e-124 449.5 283 77.7
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 3.0e-124 449.1 304 71.1
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 1.5e-123 446.8 309 68.9
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 2.8e-122 442.6 306 69.6
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 8.1e-122 441.0 282 76.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.8e-121 439.9 307 69.4
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.0e-121 437.6 307 69.1
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.3e-119 433.7 306 69.0
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.2e-119 433.0 286 76.2
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.4e-118 430.3 345 65.8
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 3.0e-116 422.5 297 68.4
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.9e-115 419.9 299 67.2
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.9e-115 419.9 299 68.2
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.3e-114 417.2 307 66.8
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 1.1e-113 414.1 300 67.3
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.1e-113 414.1 300 67.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 1.1e-113 414.1 300 67.3
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.1e-113 414.1 299 66.9
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.4e-113 413.7 300 67.0
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.8e-113 413.3 300 67.0
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.4e-113 412.9 250 82.0
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 6.9e-113 411.4 318 68.2
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 2.0e-112 409.8 300 66.7
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.6e-112 409.5 306 65.0
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.8e-112 408.3 301 63.1
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.9e-111 406.0 312 68.3
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 2.3e-108 396.4 300 68.7
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 6.7e-108 394.8 300 65.0
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.9e-107 393.3 251 77.7
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 9.7e-107 391.0 250 75.6
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 8.2e-106 387.9 250 77.6
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.0e-103 378.6 254 75.6
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.9e-95 352.8 300 57.3
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.5e-91 340.5 230 73.0
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-86 324.3 223 74.0
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.9e-86 323.6 206 77.2
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 9.7e-83 311.2 224 72.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 8.0e-77 291.6 191 77.0
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.1e-73 281.2 208 67.8
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.0e-71 272.3 335 45.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.2e-70 269.2 186 72.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.0e-60 236.1 319 45.5
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.5e-59 234.2 306 45.1
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 2.2e-58 230.3 186 67.7
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 5.9e-56 222.2 169 69.2
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 4.3e-54 216.1 142 78.2
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.4e-52 211.1 318 39.0
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-46 190.3 147 63.9
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.1e-37 160.6 100 78.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 8.9e-36 155.2 112 70.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.5e-35 154.5 117 63.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.1e-29 134.0 176 47.2
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-29 133.3 91 73.6
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 7.8e-24 115.5 79 72.2
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 3.3e-22 110.2 67 76.1
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 3.8e-18 96.7 85 61.2
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-17 94.7 77 63.6
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-13 81.3 57 68.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 6.2e-13 79.3 52 76.9
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-10 71.2 81 48.1
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 9.6e-06 55.5 49 44.9


User provided reference genes

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