Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 8.0e-169 597.0 311 100.0
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.4e-136 490.0 311 78.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.4e-136 489.2 311 79.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 7.1e-133 477.6 299 80.9
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.7e-132 475.7 297 79.5
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.0e-131 473.8 311 76.5
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.3e-131 473.4 311 78.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.3e-131 472.6 301 77.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.0e-131 472.2 301 77.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.7e-131 471.1 311 76.2
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-130 470.3 311 74.9
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-130 470.3 311 74.9
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.3e-130 468.8 311 74.6
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.6e-129 466.5 301 76.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 2.8e-129 465.7 311 74.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 8.1e-129 464.2 311 75.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-128 463.8 306 74.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.4e-128 463.4 310 74.5
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 5.3e-128 461.5 303 73.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 9.0e-128 460.7 311 74.0
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.2e-127 460.3 311 74.3
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.5e-127 459.9 313 74.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.4e-127 458.8 311 74.3
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.5e-127 458.4 311 74.3
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 5.8e-127 458.0 300 76.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.8e-126 455.3 304 73.4
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 4.9e-126 454.9 312 73.7
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 6.4e-126 454.5 306 75.8
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.1e-125 453.8 305 72.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-125 453.8 306 72.2
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.2e-125 452.2 302 75.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.1e-125 451.1 302 77.2
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 7.1e-125 451.1 267 80.9
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 9.3e-125 450.7 311 71.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-124 450.3 306 73.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-124 450.3 306 73.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 3.5e-124 448.7 311 71.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-124 448.4 304 74.3
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.9e-124 447.6 306 73.2
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 7.9e-124 447.6 300 72.0
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.0e-123 445.7 311 72.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.7e-123 444.5 306 71.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 8.7e-123 444.1 299 74.6
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.5e-122 443.4 306 72.2
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.9e-122 443.0 311 71.1
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-122 442.6 306 71.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.5e-122 442.6 296 74.3
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.5e-122 442.6 311 72.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 4.3e-122 441.8 311 70.4
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 9.6e-122 440.7 311 72.0
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.7e-121 438.7 312 71.8
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.7e-121 438.7 314 71.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.1e-120 437.2 306 71.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.4e-120 436.8 308 72.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.4e-120 436.8 311 72.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.8e-120 436.4 311 68.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 4.0e-120 435.3 311 71.4
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.3e-120 434.9 305 71.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.9e-120 434.5 310 71.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.2e-119 433.7 348 66.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-119 433.3 300 72.7
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.6e-119 432.6 301 71.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 5.8e-119 431.4 311 68.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-119 431.4 306 69.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.3e-118 430.3 300 72.0
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 3.8e-118 428.7 310 69.0
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.2e-117 425.6 308 69.8
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.2e-117 425.6 346 64.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.3e-117 424.1 297 69.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 9.3e-117 424.1 308 70.8
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.7e-116 422.5 311 68.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.5e-116 422.2 299 70.2
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 6.1e-116 421.4 299 69.9
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.0e-115 420.6 300 70.0
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.9e-115 418.7 355 62.0
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.9e-115 418.7 308 68.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 5.1e-115 418.3 303 68.3
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.7e-115 417.5 306 69.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.9e-114 416.4 306 68.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.9e-114 416.4 300 70.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.3e-114 415.6 306 67.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.7e-114 414.8 299 70.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 7.4e-114 414.5 297 70.0
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 9.7e-114 414.1 296 69.9
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-113 413.3 297 68.4
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.2e-113 412.9 306 67.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.8e-113 412.5 305 67.2
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.8e-113 412.5 312 67.0
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 3.7e-113 412.1 299 67.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.7e-113 412.1 290 71.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.8e-113 411.8 306 67.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 6.3e-113 411.4 301 69.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 8.2e-113 411.0 304 67.1
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.2e-113 411.0 311 66.2
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 8.2e-113 411.0 297 68.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-112 410.6 285 71.6
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.4e-112 410.2 306 66.7
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.4e-112 410.2 387 56.6
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.8e-112 409.8 306 66.7
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-112 409.8 312 67.3
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.1e-112 409.1 306 66.0
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.1e-112 409.1 260 78.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.1e-112 409.1 306 66.3
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.1e-112 408.7 297 66.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 5.3e-112 408.3 303 67.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-111 407.1 305 65.9
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.2e-111 407.1 311 65.6
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.5e-111 406.8 299 67.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.5e-111 406.8 292 68.2
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.6e-111 406.0 295 69.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.4e-111 405.6 290 70.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 5.9e-111 404.8 288 68.8
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 5.9e-111 404.8 307 65.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 7.7e-111 404.4 272 70.6
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.3e-110 403.7 349 60.7
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.4e-109 400.2 303 66.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.9e-109 399.8 286 67.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 5.5e-109 398.3 342 62.3
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.7e-108 396.0 258 74.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.1e-106 390.6 230 83.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.5e-106 390.2 277 70.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 7.4e-106 387.9 308 66.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.4e-104 383.6 277 67.1
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 7.2e-101 371.3 299 63.9
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.0e-99 367.5 300 61.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.1e-98 364.0 306 60.8
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 3.7e-97 359.0 306 60.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-95 353.6 288 61.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 7.4e-90 334.7 276 59.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.5e-85 319.7 295 60.7
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.2e-85 318.9 265 61.1
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.0e-83 312.8 231 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 7.5e-82 308.1 288 56.2
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 9.7e-82 307.8 301 51.5
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.4e-80 303.9 307 51.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.3e-80 302.0 295 52.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.7e-78 297.0 260 59.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.5e-77 293.9 311 50.2
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.2e-77 292.7 296 50.7
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.1e-76 290.0 275 54.5
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 4.0e-75 285.8 304 49.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 8.8e-75 284.6 304 49.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.0e-71 273.5 229 61.1
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-69 265.8 195 65.1
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.5e-66 257.3 148 80.4
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.2e-64 248.1 247 50.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.6e-62 241.9 317 48.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.9e-61 240.4 189 64.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.2e-60 237.7 196 64.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-59 234.6 183 66.1
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.3e-59 233.4 150 76.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 7.5e-58 228.4 207 58.9
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 6.4e-57 225.3 247 48.6
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 5.6e-53 212.2 221 48.9
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 4.4e-50 202.6 150 67.3
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.6e-47 192.6 295 37.3
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.4e-35 154.5 293 33.4
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-29 134.8 105 67.6
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.8e-28 129.4 323 28.2
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 9.9e-26 121.7 214 33.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.9e-24 117.5 114 55.3
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-24 117.1 76 76.3
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 3.0e-22 110.2 288 28.1
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 8.7e-22 108.6 124 50.8
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 4.0e-19 99.8 305 29.5
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.9e-09 66.2 185 33.5
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 6.5e-09 65.9 38 81.6
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.1e-08 65.1 58 48.3


User provided reference genes

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