Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1694.1 850 100.0
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1379.8 848 81.4
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1359.7 909 76.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1328.5 855 79.2
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1304.7 857 76.8
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1282.7 854 75.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1262.7 865 74.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1239.9 848 74.3
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1237.6 848 74.2
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1237.2 851 74.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1231.1 830 74.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 959 68.0
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1216.4 833 73.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1216.1 834 73.9
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1214.9 856 71.4
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1208.4 844 73.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 848 72.5
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1207.2 850 71.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1206.8 850 71.6
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1203.7 828 73.2
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1198.7 856 72.7
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1197.6 859 71.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1196.8 856 72.7
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 856 72.2
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1192.9 855 71.9
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1189.5 858 71.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 857 70.6
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1186.4 857 71.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 860 70.7
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1185.2 884 70.5
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1181.0 858 71.3
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 854 70.8
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1176.4 860 70.9
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 861 70.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 858 71.0
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1172.5 851 70.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1171.4 854 71.0
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1170.6 855 70.6
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 860 70.7
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1166.4 813 73.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 834 71.0
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 850 69.4
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 851 70.5
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 831 70.6
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1152.5 857 69.4
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 831 70.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 831 70.5
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 856 69.9
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 854 70.1
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 855 69.0
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1148.7 859 69.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 856 68.8
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1146.0 856 70.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1144.4 856 69.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1143.6 763 75.4
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 869 69.3
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1136.7 884 68.1
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1136.3 832 70.4
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 853 68.8
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1135.6 861 69.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1134.8 834 69.3
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1134.4 861 69.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1131.3 854 67.9
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1130.9 858 67.2
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 881 67.1
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1124.0 855 68.1
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1124.0 851 68.4
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1123.6 855 68.1
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1123.2 946 64.8
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1122.8 859 68.0
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1122.1 856 67.3
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1121.3 765 73.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 727 76.5
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 850 67.1
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1109.0 857 67.4
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 761 74.8
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1105.5 854 67.1
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1104.7 938 63.4
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1103.6 737 75.7
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 852 67.1
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1095.1 833 67.5
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 848 66.6
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 865 66.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1078.2 872 65.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1077.8 761 72.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1077.4 858 65.4
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1077.4 858 65.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1075.1 860 65.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 5.8e-312 1073.5 938 62.0
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.5e-310 1069.3 852 65.4
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.6e-310 1068.5 855 64.8
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 7.0e-308 1060.4 854 65.1
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 2.7e-307 1058.5 851 63.8
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 7.8e-307 1057.0 855 64.9
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 7.8e-307 1057.0 855 64.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.3e-306 1056.2 1008 58.8
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.7e-306 1055.8 853 64.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 7.3e-305 1050.4 853 64.4
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 9.5e-305 1050.0 700 75.7
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 2.1e-304 1048.9 853 64.4
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.0e-303 1046.6 829 65.5
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 4.4e-302 1041.2 838 65.3
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 8.3e-301 1036.9 851 63.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.6e-291 1004.6 850 62.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 5.2e-287 991.1 788 65.2
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 3.9e-282 974.9 715 68.7
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.9e-282 974.9 735 68.6
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.8e-279 966.1 789 63.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.7e-277 959.5 698 72.1
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 5.1e-274 948.0 713 67.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.3e-273 945.3 838 61.2
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 6.2e-272 941.0 841 58.5
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.1e-272 940.6 837 61.4
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.3e-264 916.8 853 59.7
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.1e-248 862.8 663 67.1
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.9e-231 804.7 530 76.4
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 9.4e-228 794.3 852 52.2
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 8.5e-221 771.2 774 57.4
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.7e-211 739.6 533 70.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.1e-207 727.6 875 47.5
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.2e-203 714.1 856 48.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.3e-202 709.9 853 47.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.7e-198 696.4 478 73.8
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.0e-191 671.8 753 51.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.3e-173 614.4 464 69.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 3.8e-168 596.3 763 48.6
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 3.8e-168 596.3 466 65.5
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.6e-163 579.7 539 58.4
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 8.1e-163 578.6 802 44.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 7.1e-159 565.5 461 61.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.0e-157 561.6 390 71.8
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.5e-156 557.0 453 63.1
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.8e-155 553.5 493 62.9
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.4e-151 539.3 389 70.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 6.5e-128 462.6 460 55.4
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 6.9e-122 442.6 297 73.4
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.0e-120 436.4 352 64.8
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.6e-116 424.1 382 58.4
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.1e-114 418.7 402 59.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 5.9e-113 412.9 307 68.7
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 9.4e-111 405.6 277 71.8
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 5.3e-98 363.2 323 58.8
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 1.3e-91 342.0 244 69.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.3e-88 331.3 203 78.8
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 5.2e-85 320.1 288 58.7
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.4e-66 256.9 173 71.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 3.6e-62 244.2 185 64.9
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 7.5e-60 236.5 155 78.1
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.4e-59 233.4 193 62.7
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 2.2e-51 208.4 158 70.9
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 6.2e-46 190.3 130 73.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 6.9e-45 186.8 264 45.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 7.1e-42 176.8 491 30.1
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.4e-29 135.2 128 60.9
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.2e-28 132.9 147 55.1
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 2.2e-27 128.6 72 88.9
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.1e-26 126.3 122 55.7
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.1e-25 122.1 106 60.4
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.6e-23 114.0 86 68.6
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 8.4e-19 100.1 75 73.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 9.3e-18 96.7 92 56.5
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 3.5e-17 94.7 68 73.5
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 8.7e-16 90.1 57 80.7
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 2.4e-13 82.0 70 61.4
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 2.3e-08 65.5 35 85.7
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 2.3e-08 65.5 35 85.7
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 2.3e-08 65.5 35 85.7
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 2.3e-08 65.5 72 55.6
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.8e-08 63.5 35 82.9
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-06 59.7 43 72.1
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.3e-06 59.7 47 68.1


User provided reference genes

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