Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 1.2e-68 263.1 131 100.0
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 5.2e-45 184.5 123 75.6
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 4.6e-41 171.4 121 67.8
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 2.1e-38 162.5 110 70.9
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.1e-37 160.2 121 66.9
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 4.0e-37 158.3 120 68.3
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 4.0e-37 158.3 121 66.9
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.0e-36 156.0 121 66.9
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 2.2e-35 152.5 121 64.5
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.2e-35 152.5 115 67.8
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.2e-35 152.5 123 66.7
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 6.4e-35 151.0 115 67.0
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.1e-34 150.2 119 67.2
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.4e-34 149.8 105 69.5
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.4e-34 149.8 116 65.5
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 4.2e-34 148.3 121 60.3
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 4.2e-34 148.3 115 68.7
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 5.4e-34 147.9 112 66.1
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 7.1e-34 147.5 113 61.9
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 9.3e-34 147.1 113 64.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 7.9e-33 144.1 119 61.3
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.7e-32 142.9 116 59.5
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.0e-32 142.1 110 66.4
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.6e-32 141.0 113 61.9
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 6.6e-32 141.0 118 65.3
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 8.7e-32 140.6 125 56.8
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 8.7e-32 140.6 117 62.4
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.5e-31 139.8 121 61.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.9e-31 139.4 125 56.8
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 3.3e-31 138.7 114 60.5
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.3e-31 138.7 106 64.2
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 5.6e-31 137.9 107 64.5
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 7.4e-31 137.5 116 60.3
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.1e-30 136.0 113 62.8
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.1e-29 133.7 114 60.5
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.1e-29 133.7 117 59.0
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.4e-29 132.5 114 60.5
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.4e-29 132.5 114 60.5
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 3.1e-29 132.1 112 59.8
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 3.1e-29 132.1 112 60.7
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 6.9e-29 131.0 113 56.6
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 9.0e-29 130.6 127 52.8
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.2e-28 130.2 114 57.0
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.2e-28 130.2 112 61.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.6e-28 129.0 113 60.2
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 9.9e-28 127.1 121 54.5
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.7e-27 126.3 115 57.4
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 8.4e-27 124.0 118 50.8
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.1e-26 123.6 113 57.5
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.1e-26 123.6 113 57.5
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.9e-26 122.9 119 54.6
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.9e-26 122.9 115 54.8
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 4.2e-26 121.7 113 57.5
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 5.5e-26 121.3 115 53.9
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 7.1e-26 120.9 117 54.7
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 9.3e-26 120.6 115 50.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.2e-25 120.2 117 56.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 2.7e-25 119.0 107 57.0
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 3.5e-25 118.6 117 56.4
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 6.0e-25 117.9 113 56.6
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 7.9e-25 117.5 114 51.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.3e-24 115.9 114 56.1
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 3.0e-24 115.5 112 52.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 8.7e-24 114.0 120 52.5
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.1e-23 113.6 114 55.3
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.9e-23 112.8 90 61.1
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.1e-21 107.1 140 45.0
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 1.4e-21 106.7 93 58.1
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.4e-21 105.9 113 49.6
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 3.1e-21 105.5 73 69.9
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 5.3e-21 104.8 65 73.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.5e-20 103.2 67 70.1
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.0e-20 102.8 66 72.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.0e-20 102.8 66 72.7
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.0e-20 102.8 66 72.7
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.2e-19 99.4 66 68.2
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 8.4e-19 97.4 74 66.2
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 3.5e-17 92.0 65 67.7
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 4.6e-17 91.7 70 65.7
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 6.0e-17 91.3 70 65.7
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 6.0e-17 91.3 70 65.7
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-16 90.1 66 66.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 7.4e-15 84.3 59 66.1
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 3.1e-13 79.0 133 39.8
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.3e-11 73.6 114 37.7
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 7.2e-10 67.8 53 58.5
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 7.2e-10 67.8 113 31.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.6e-06 56.6 43 60.5
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.8e-06 55.8 56 53.6


User provided reference genes

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