Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.0e-232 809.7 398 100.0
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.8e-144 516.5 396 68.9
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 3.5e-124 449.1 410 62.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.7e-115 420.2 364 61.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 6.6e-115 418.3 403 60.5
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.6e-113 412.5 297 70.0
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.0e-111 406.8 340 65.0
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.4e-111 406.0 365 60.8
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 4.4e-111 405.6 344 63.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 5.7e-111 405.2 344 62.5
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 7.5e-111 404.8 365 60.5
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 7.5e-111 404.8 344 63.1
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 9.8e-111 404.4 303 67.7
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.3e-110 404.1 344 62.8
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 8.3e-110 401.4 304 66.8
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.4e-109 400.6 297 68.7
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 9.2e-109 397.9 300 66.3
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 4.5e-108 395.6 299 65.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.5e-108 395.6 337 62.3
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.0e-107 394.4 337 62.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.3e-107 394.0 294 68.0
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.7e-107 393.7 276 70.3
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.7e-107 393.7 298 66.8
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.9e-107 392.9 294 65.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.6e-107 391.7 306 65.4
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.9e-106 390.2 300 65.3
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 3.3e-106 389.4 467 51.8
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 5.6e-106 388.7 376 58.2
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 7.3e-106 388.3 299 64.9
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 9.5e-106 387.9 390 58.5
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 1.2e-105 387.5 396 56.3
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.0e-104 384.4 301 64.8
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.0e-104 384.4 271 70.8
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.8e-104 383.6 279 68.1
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.2e-103 380.9 296 66.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.0e-103 380.2 305 64.9
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.4e-103 379.4 277 67.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.4e-103 379.4 288 65.3
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.4e-103 379.4 288 67.0
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 4.4e-103 379.0 300 63.0
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 4.4e-103 379.0 369 57.2
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 5.8e-103 378.6 275 69.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.8e-103 378.6 306 63.7
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.7e-102 377.1 327 60.9
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 2.2e-102 376.7 290 66.2
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.7e-102 375.9 303 62.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 4.9e-102 375.6 275 67.6
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 6.4e-102 375.2 353 56.4
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 6.4e-102 375.2 298 64.8
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 8.3e-102 374.8 294 63.6
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 4.1e-101 372.5 291 63.9
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 7.0e-101 371.7 327 59.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.6e-100 370.5 314 61.5
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.6e-100 370.5 291 63.6
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.6e-100 370.5 307 62.2
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 2.0e-100 370.2 300 64.3
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.7e-100 369.8 309 62.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.5e-100 369.4 306 63.7
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 6.0e-100 368.6 341 57.8
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.0e-100 368.6 296 64.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.7e-99 367.1 307 60.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.7e-99 367.1 307 60.6
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.0e-99 366.3 296 64.2
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 6.6e-99 365.2 289 64.7
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.1e-98 364.4 280 66.8
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.5e-98 364.0 307 61.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.9e-98 363.6 273 66.3
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 4.3e-98 362.5 307 60.6
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 7.3e-98 361.7 294 62.2
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.8e-97 359.8 304 60.2
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.6e-97 359.4 277 64.6
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 4.7e-97 359.0 360 56.1
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 4.7e-97 359.0 305 58.7
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 8.1e-97 358.2 296 65.2
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 1.1e-96 357.8 329 56.8
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.8e-96 357.1 331 56.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.8e-96 357.1 336 60.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 8.9e-96 354.8 306 58.8
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 8.9e-96 354.8 303 59.4
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.2e-95 354.4 306 58.5
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.2e-95 354.4 306 58.5
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.5e-95 354.0 341 54.8
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.5e-95 354.0 301 61.5
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.6e-95 353.2 325 59.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.4e-95 352.4 307 59.0
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 4.4e-95 352.4 307 59.6
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 4.4e-95 352.4 270 64.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 5.8e-95 352.1 306 60.1
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.2e-94 350.1 276 63.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.4e-94 348.6 285 60.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.2e-93 346.3 392 51.3
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 7.1e-93 345.1 303 58.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.6e-92 344.0 343 56.0
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.3e-91 340.9 295 59.7
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.7e-91 340.5 276 62.3
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 5.1e-91 339.0 293 59.0
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 5.1e-91 339.0 246 67.5
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 6.6e-91 338.6 314 57.6
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 6.2e-89 332.0 292 59.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 4.0e-88 329.3 340 53.2
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 8.9e-88 328.2 433 45.0
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.2e-87 327.8 280 62.1
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.8e-87 325.5 259 64.5
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.1e-85 321.2 237 66.7
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.4e-85 320.9 317 56.8
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 5.4e-85 318.9 306 52.0
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 2.5e-82 310.1 359 50.1
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.4e-80 303.5 237 63.7
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 3.1e-80 303.1 311 52.4
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 6.8e-80 302.0 226 65.5
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.7e-75 287.3 304 51.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.3e-73 281.2 279 52.3
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.5e-71 274.2 283 54.4
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.6e-68 262.7 233 56.7
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.4e-64 251.1 294 46.9
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 4.5e-63 246.1 210 59.5
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 4.5e-63 246.1 180 66.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 7.9e-60 235.3 190 58.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 8.4e-54 215.3 296 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.5e-42 177.9 141 62.4
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 5.3e-40 169.5 203 47.8
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.9e-40 169.1 138 64.5
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.3e-33 146.0 143 56.6
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.3e-22 111.7 343 27.4
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.0e-19 100.5 65 76.9
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 3.3e-18 97.1 67 68.7
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 5.2e-11 73.2 83 47.0
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 2.0e-10 71.2 44 72.7
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.2e-06 57.8 33 84.8


User provided reference genes

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