Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.9e-118 429.1 207 100.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.4e-100 369.8 207 85.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 4.0e-100 368.2 207 85.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 4.0e-100 368.2 207 85.5
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 4.0e-100 368.2 205 85.4
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 5.3e-100 367.9 207 86.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 3.4e-99 365.2 207 84.1
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 3.4e-99 365.2 207 84.1
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 5.8e-99 364.4 207 84.1
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.3e-98 363.2 207 84.1
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.7e-98 362.8 207 84.1
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 2.9e-98 362.1 207 85.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.1e-97 360.1 207 83.6
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 5.5e-97 357.8 204 84.8
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.6e-96 354.8 207 83.1
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 6.0e-96 354.4 205 81.0
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.0e-96 354.4 207 82.6
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 7.9e-96 354.0 205 82.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.0e-95 353.6 206 82.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 2.3e-95 352.4 207 81.6
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.3e-95 352.4 207 82.6
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 3.0e-95 352.1 207 82.6
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 3.0e-95 352.1 212 82.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 3.9e-95 351.7 199 83.9
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 6.7e-95 350.9 210 81.9
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 6.7e-95 350.9 198 84.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 8.7e-95 350.5 198 84.3
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 8.7e-95 350.5 207 82.1
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.1e-94 350.1 207 81.6
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.1e-94 350.1 206 81.6
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.9e-94 349.4 197 81.7
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.9e-94 349.4 197 82.7
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 2.5e-94 349.0 207 82.1
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.5e-94 349.0 199 82.9
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 4.3e-94 348.2 206 82.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 7.4e-94 347.4 199 83.9
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 7.4e-94 347.4 207 80.2
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 9.7e-94 347.1 207 79.7
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 9.7e-94 347.1 204 80.9
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.3e-93 346.7 199 82.4
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.3e-93 346.7 212 81.6
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.6e-93 346.3 207 81.6
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.2e-93 345.9 207 80.7
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.8e-93 345.5 208 82.2
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 3.7e-93 345.1 197 81.2
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 4.8e-93 344.7 211 79.6
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 4.8e-93 344.7 207 81.6
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 6.3e-93 344.4 199 83.4
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 6.3e-93 344.4 204 78.9
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 8.2e-93 344.0 197 82.2
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 82.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.1e-92 342.0 207 79.2
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.1e-92 342.0 199 82.4
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 6.9e-92 340.9 207 78.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 9.0e-92 340.5 207 81.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 9.0e-92 340.5 207 81.2
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 79.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.2e-91 340.1 206 80.6
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.2e-91 340.1 206 80.6
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.2e-91 340.1 219 77.6
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 79.4
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.2e-91 340.1 207 79.7
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 2.0e-91 339.3 209 79.9
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.6e-91 339.0 199 82.9
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 3.4e-91 338.6 230 72.2
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 4.5e-91 338.2 204 80.4
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.5e-91 338.2 207 78.3
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 4.5e-91 338.2 204 79.9
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 7.6e-91 337.4 210 79.5
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.0e-90 337.0 201 80.1
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.0e-90 337.0 201 80.6
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.3e-90 336.7 207 79.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.3e-90 336.7 209 78.5
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 2.9e-90 335.5 211 76.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.9e-90 335.5 208 78.8
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 3.8e-90 335.1 211 78.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 5.0e-90 334.7 209 78.5
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.0e-90 334.7 202 79.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 8.5e-90 334.0 208 79.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-89 333.2 209 78.0
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.9e-89 332.8 198 80.8
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.5e-89 332.4 202 78.7
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 4.2e-89 331.6 206 78.2
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 9.3e-89 330.5 197 79.2
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.7e-88 328.9 202 78.7
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.7e-88 328.9 207 76.8
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.6e-88 328.6 206 77.7
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.0e-87 327.0 205 79.0
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 8.8e-87 323.9 199 79.4
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 2.5e-86 322.4 201 78.1
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 7.4e-86 320.9 204 77.5
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.2e-85 319.3 201 77.1
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 6.3e-85 317.8 195 77.9
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.1e-84 317.0 198 76.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.1e-84 317.0 198 76.8
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.2e-83 313.5 202 75.7
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 3.4e-83 312.0 202 75.2
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.3e-82 310.1 202 74.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.3e-78 295.4 185 79.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 4.4e-78 295.0 173 82.7
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 5.3e-76 288.1 205 71.7
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 4.5e-75 285.0 203 66.5
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 7.2e-73 277.7 167 78.4
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 6.7e-71 271.2 200 68.5
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.1e-70 270.4 199 66.3
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.5e-70 270.0 165 78.2
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.6e-67 259.2 208 63.9
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.9e-67 258.1 208 63.5
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 7.7e-67 257.7 200 61.0
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 3.6e-64 248.8 202 59.4
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 8.0e-64 247.7 205 58.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.0e-63 247.3 150 79.3
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 8.2e-61 237.7 159 70.4
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.8e-60 236.5 197 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 4.5e-59 231.9 204 55.4
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.7e-58 229.9 134 82.8
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 1.2e-54 217.2 145 73.1
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.0e-50 204.1 144 72.9
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.7e-50 203.4 140 74.3
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 2.9e-50 202.6 124 72.6
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.6e-48 196.8 119 79.0
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.6e-48 196.8 119 78.2
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.4e-44 183.7 168 58.3
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.6e-43 180.3 99 85.9
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 7.5e-38 161.4 169 49.1
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 8.6e-34 147.9 100 73.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.2e-32 144.1 203 41.9
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 4.1e-28 129.0 203 41.4
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.9e-26 122.5 100 60.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 2.8e-24 116.3 97 62.9
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 6.8e-23 111.7 77 71.4
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.1e-20 104.4 59 81.4
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.0e-18 97.8 77 67.5
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 5.8e-14 82.0 40 92.5
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 1.2e-08 64.3 37 78.4
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.8e-08 63.2 40 75.0
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 1.1e-07 61.2 36 80.6
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 2.4e-07 60.1 35 77.1


User provided reference genes

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