Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-250 869.4 444 100.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 2.8e-223 778.5 444 88.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 5.6e-216 754.2 445 88.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 7.4e-208 727.2 444 84.5
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 3.7e-207 724.9 448 84.6
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 8.1e-207 723.8 444 83.6
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 4.0e-206 721.5 444 82.4
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.4e-205 718.4 444 84.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 6.4e-204 714.1 445 84.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 8.4e-204 713.8 442 82.6
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.4e-203 712.2 444 83.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 5.5e-203 711.1 448 82.4
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.1e-203 710.7 446 83.6
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 7.1e-203 710.7 442 82.1
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.3e-203 710.3 449 82.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 9.3e-203 710.3 441 81.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.2e-202 709.9 444 81.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.1e-202 709.1 447 83.0
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.1e-202 709.1 444 83.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.7e-202 708.8 444 81.1
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 7.9e-202 707.2 442 83.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.0e-201 706.8 446 82.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.8e-201 706.1 446 83.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 6.7e-201 704.1 444 82.0
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 8.7e-201 703.7 444 80.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 8.7e-201 703.7 442 81.7
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.1e-200 703.4 444 81.1
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.1e-200 703.4 442 83.3
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.1e-200 703.4 444 81.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.5e-200 703.0 444 81.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-200 703.0 447 81.0
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-200 702.6 444 81.5
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-200 702.6 399 87.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.5e-200 702.2 444 81.8
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.5e-200 702.2 444 81.3
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.3e-200 701.8 397 88.2
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.3e-200 701.8 442 83.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.3e-200 701.8 444 81.3
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 5.6e-200 701.0 447 82.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.7e-199 698.4 443 81.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.7e-199 698.4 443 81.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.8e-198 696.0 444 80.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.8e-198 696.0 444 81.1
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.9e-198 694.1 445 81.6
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 9.0e-198 693.7 445 80.2
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.5e-197 693.0 442 80.5
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 4.5e-197 691.4 445 80.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.6e-197 690.6 443 80.8
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 7.6e-197 690.6 441 80.3
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.0e-196 690.3 443 79.9
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.0e-196 690.3 445 80.2
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.7e-196 689.5 431 82.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.2e-196 689.1 445 81.1
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.2e-196 689.1 445 80.4
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.9e-196 688.7 445 81.3
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.9e-196 688.0 445 80.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.4e-195 686.4 444 79.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.4e-195 686.4 445 80.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.2e-195 685.3 443 79.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.2e-195 685.3 443 80.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.2e-195 685.3 444 80.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.5e-195 684.5 445 80.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.5e-195 684.5 444 80.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 7.1e-195 684.1 442 79.6
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.1e-195 684.1 438 80.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.2e-194 683.3 444 79.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.6e-194 682.9 442 78.5
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 6.0e-194 681.0 444 79.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-193 679.9 443 79.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.8e-193 679.5 443 79.7
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.8e-193 679.5 445 79.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.1e-193 677.9 441 79.1
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 79.2
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 5.7e-192 674.5 418 82.1
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 7.4e-192 674.1 444 79.5
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.8e-191 672.2 442 80.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 4.8e-191 671.4 445 78.4
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.3e-191 671.0 442 77.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.8e-190 669.5 446 77.4
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 3.4e-189 665.2 443 76.3
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.9e-188 662.1 442 78.5
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 5.0e-188 661.4 441 77.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 8.5e-188 660.6 442 78.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.2e-187 658.7 442 77.1
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 7.2e-187 657.5 442 78.1
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 7.2e-187 657.5 442 78.1
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.1e-186 656.0 442 77.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.7e-186 655.6 399 81.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.1e-186 654.4 399 81.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 5.1e-185 651.4 445 77.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 5.1e-185 651.4 441 76.4
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 6.7e-185 651.0 442 76.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 6.7e-185 651.0 443 77.0
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-184 650.2 387 83.2
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-184 650.2 444 75.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-184 649.8 443 76.5
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-184 649.8 443 76.5
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.0e-184 649.4 442 76.7
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-184 648.3 443 77.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 4.3e-184 648.3 442 76.2
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 7.4e-184 647.5 443 77.4
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.4e-184 647.5 443 76.5
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.4e-184 647.5 443 76.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 7.4e-184 647.5 396 83.1
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.1e-182 643.7 417 79.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.0e-181 639.4 391 83.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 7.7e-181 637.5 396 81.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 7.7e-181 637.5 396 81.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.9e-179 632.9 377 82.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.7e-178 628.2 418 75.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.0e-177 627.1 418 75.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.9e-177 625.2 442 74.9
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.3e-176 622.1 401 77.8
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.3e-176 622.1 486 68.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.4e-176 620.9 421 75.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.7e-175 619.8 381 81.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.8e-174 616.3 398 77.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.3e-172 610.1 488 67.0
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.9e-171 606.3 443 72.9
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.2e-170 603.6 384 81.5
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.2e-169 598.2 446 72.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 9.1e-158 560.8 370 79.5
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 9.4e-155 550.8 394 74.9
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 8.8e-153 544.3 404 68.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 4.8e-151 538.5 307 88.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-150 537.3 377 69.8
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-150 536.6 364 78.0
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-146 523.1 371 67.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.7e-143 513.5 366 67.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-142 510.8 379 66.8
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-141 507.3 377 66.8
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.6e-141 506.9 377 66.8
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.8e-141 504.6 370 66.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 6.6e-140 501.5 370 67.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.6e-139 498.4 361 69.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.2e-138 497.3 364 68.1
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.6e-138 495.7 364 66.2
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 3.6e-138 495.7 389 65.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.0e-137 492.3 364 64.8
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.4e-134 483.0 374 62.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.9e-131 473.4 374 61.8
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.4e-129 467.2 317 76.3
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.1e-126 457.6 360 62.5
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 2.1e-114 416.8 365 59.5
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.2e-96 357.8 366 53.8
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.0e-92 343.2 302 60.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-81 308.1 226 69.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.9e-70 270.8 335 44.5
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.5e-70 269.2 204 73.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.6e-61 240.0 157 81.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 4.8e-58 229.6 123 86.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 6.3e-58 229.2 198 60.1
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.7e-55 221.1 159 69.8
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.5e-40 170.2 217 44.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.2e-37 161.8 119 69.7
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.8e-36 157.9 111 77.5
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.1e-33 147.1 81 90.1
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 8.6e-31 139.0 82 85.4
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 7.2e-30 136.0 170 46.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 9.8e-27 125.6 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.3e-20 104.4 98 55.1
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.2e-18 97.8 51 86.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.0e-15 89.0 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.3e-06 57.4 35 74.3


User provided reference genes

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