Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.9e-154 548.1 281 100.0
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.4e-118 428.7 273 78.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.9e-113 412.9 277 76.2
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 2.1e-107 392.9 282 74.5
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 7.9e-99 364.4 245 73.1
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.8e-98 363.2 276 70.3
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.3e-98 362.8 245 72.7
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 3.0e-98 362.5 247 74.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 6.7e-98 361.3 244 75.0
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 2.6e-97 359.4 238 73.9
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.2e-96 356.3 251 70.5
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 6.3e-96 354.8 264 69.7
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 8.2e-96 354.4 277 65.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 8.2e-96 354.4 244 71.3
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 1.8e-95 353.2 248 71.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.4e-95 352.8 241 73.0
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 4.1e-95 352.1 248 71.0
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 5.3e-95 351.7 286 64.7
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.3e-95 351.7 294 63.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 6.9e-95 351.3 294 63.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 9.1e-95 350.9 245 71.0
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.5e-94 350.1 240 72.1
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.5e-94 350.1 243 71.2
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.5e-94 350.1 239 73.2
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.5e-94 350.1 251 68.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.0e-94 349.7 238 71.8
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.0e-94 349.7 240 71.7
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.6e-94 349.4 260 68.5
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.6e-94 349.4 244 71.7
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 4.5e-94 348.6 245 69.8
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 5.9e-94 348.2 280 65.4
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 7.7e-94 347.8 249 71.1
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.7e-93 346.7 240 72.5
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.7e-93 346.7 268 66.8
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 5.0e-93 345.1 279 64.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 6.5e-93 344.7 245 70.6
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 6.5e-93 344.7 244 70.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.1e-92 344.0 237 72.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.4e-92 343.6 238 72.7
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.4e-92 343.6 240 70.4
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.9e-92 343.2 259 66.4
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.5e-92 342.8 268 66.4
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.5e-92 341.7 256 68.8
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.4e-92 340.9 262 67.2
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-91 340.5 227 73.6
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.2e-91 340.5 262 67.2
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.2e-91 340.5 273 64.8
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.6e-91 340.1 240 69.6
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.7e-91 339.3 266 66.2
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.6e-91 339.0 272 65.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 4.7e-91 338.6 288 63.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.0e-90 337.4 239 70.7
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.0e-90 337.4 243 69.1
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.0e-90 337.4 247 70.0
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.0e-90 337.4 254 68.1
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.3e-90 336.3 238 70.6
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 3.0e-90 335.9 254 68.5
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.9e-90 335.5 274 65.0
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 5.2e-90 335.1 243 66.7
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 8.8e-90 334.3 248 68.1
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.1e-89 334.0 248 69.0
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.5e-89 333.6 249 69.1
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.5e-89 333.6 282 59.9
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.0e-89 333.2 247 70.0
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.0e-89 333.2 265 67.5
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.3e-89 332.4 250 69.2
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 4.4e-89 332.0 261 65.5
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 4.4e-89 332.0 274 64.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 5.7e-89 331.6 249 66.3
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.7e-88 330.1 250 69.2
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.7e-88 330.1 242 67.4
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.2e-88 329.7 276 63.4
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 4.8e-88 328.6 249 68.3
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 6.3e-88 328.2 275 61.5
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 8.2e-88 327.8 224 74.1
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-87 327.0 247 68.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 3.1e-87 325.9 247 68.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 5.3e-87 325.1 240 66.7
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 5.3e-87 325.1 251 66.1
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 7.0e-87 324.7 248 67.3
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.0e-86 323.2 266 65.4
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.0e-86 323.2 262 65.6
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.0e-85 320.9 291 59.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.3e-85 320.5 216 71.3
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.3e-85 320.5 242 66.9
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 3.2e-84 315.8 244 64.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.2e-84 315.8 278 58.6
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.7e-83 312.8 246 63.8
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 6.1e-83 311.6 244 62.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 8.0e-83 311.2 277 60.6
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 2.3e-82 309.7 239 64.9
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.7e-80 303.5 205 75.6
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.8e-79 300.1 216 69.0
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 8.5e-77 291.2 232 66.4
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.9e-76 290.0 249 62.7
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 2.5e-76 289.7 227 66.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 5.5e-76 288.5 213 66.7
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.0e-74 284.3 266 55.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.2e-74 282.0 232 59.1
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.4e-73 279.3 237 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.1e-71 274.2 250 56.8
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.5e-70 268.9 217 63.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 8.6e-69 264.6 205 67.3
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.8e-66 256.9 239 55.2
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.8e-64 249.6 186 67.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 8.3e-64 248.1 244 55.3
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 6.1e-59 231.9 144 76.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.0e-58 229.6 137 77.4
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.6e-46 190.7 217 48.4
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 8.6e-45 184.9 145 63.4
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.2e-43 181.0 257 44.0
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 3.7e-40 169.5 223 42.6
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.4e-31 141.0 88 73.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.9e-31 140.6 137 54.7
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.4e-26 124.4 138 52.9
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-19 100.9 56 80.4
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 3.6e-19 99.8 82 57.3
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 4.0e-18 96.3 68 63.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.6e-17 93.6 118 49.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 4.5e-17 92.8 57 73.7
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 3.8e-16 89.7 137 40.9
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 8.4e-16 88.6 56 73.2
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.1e-14 84.0 63 60.3
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.0e-13 81.6 52 71.2
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 6.7e-13 79.0 171 35.1
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.1e-12 78.2 59 61.0
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.9e-12 77.4 57 68.4
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.9e-12 77.4 109 42.2
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 2.5e-12 77.0 49 69.4
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.1e-11 73.9 53 64.2
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.4e-10 70.5 51 60.8
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 3.4e-09 66.6 43 72.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.6e-06 57.8 80 42.5


User provided reference genes

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