Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 5.8e-158 560.8 281 100.0
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.5e-68 263.1 290 49.3
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 6.8e-58 228.4 290 45.5
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.5e-57 227.3 276 46.7
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.2e-56 223.4 283 45.6
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-56 221.9 279 44.4
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.2e-54 217.6 281 46.3
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 6.0e-54 215.3 277 44.4
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 2.3e-53 213.4 292 43.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 6.6e-53 211.8 284 44.4
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.6e-53 211.5 282 44.0
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.1e-52 211.1 277 44.0
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.5e-52 210.7 279 43.4
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.5e-52 209.9 281 43.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.3e-52 209.1 301 43.5
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 5.6e-52 208.8 284 42.3
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 5.6e-52 208.8 286 42.3
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.1e-51 206.8 275 42.5
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.8e-51 206.5 278 40.3
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 3.6e-51 206.1 288 42.4
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 3.6e-51 206.1 282 42.6
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 4.7e-51 205.7 291 41.2
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 4.7e-51 205.7 287 42.9
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 6.2e-51 205.3 279 42.3
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 6.2e-51 205.3 277 42.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 6.2e-51 205.3 283 43.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.1e-50 204.5 281 41.6
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.4e-50 204.1 283 43.8
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.8e-50 203.8 286 43.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.3e-50 203.4 276 43.5
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.3e-50 203.4 286 42.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.1e-50 203.0 280 43.6
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 4.0e-50 202.6 280 43.6
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 4.0e-50 202.6 286 41.6
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 5.2e-50 202.2 283 42.0
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 5.2e-50 202.2 284 42.6
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 5.2e-50 202.2 283 43.8
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 6.8e-50 201.8 282 42.2
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 8.9e-50 201.4 285 41.8
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 8.9e-50 201.4 283 42.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.2e-49 201.1 278 40.3
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.2e-49 201.1 313 40.6
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.5e-49 200.7 278 40.6
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 2.0e-49 200.3 284 41.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 5.8e-49 198.7 278 40.6
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 5.8e-49 198.7 271 43.2
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 5.8e-49 198.7 282 42.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 7.5e-49 198.4 281 41.3
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 9.8e-49 198.0 289 43.3
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.2e-48 196.8 290 40.3
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 6.4e-48 195.3 286 42.7
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 8.3e-48 194.9 288 39.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.1e-47 194.5 287 41.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.4e-47 194.1 280 40.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.4e-47 193.4 314 40.4
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.4e-47 193.4 282 40.8
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.2e-47 193.0 281 40.6
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 4.1e-47 192.6 282 41.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 5.4e-47 192.2 283 41.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 5.4e-47 192.2 288 41.3
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 9.2e-47 191.4 278 40.3
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.6e-46 190.7 292 39.7
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.7e-46 189.9 277 39.7
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 4.6e-46 189.1 299 39.1
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 6.0e-46 188.7 288 39.6
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.7e-45 187.2 294 40.8
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 5.0e-45 185.7 284 39.4
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 6.6e-45 185.3 290 39.3
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.9e-44 183.7 210 46.7
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 2.5e-44 183.3 284 40.5
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 2.5e-44 183.3 283 39.6
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.5e-44 183.3 284 41.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 3.3e-44 183.0 284 39.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.4e-42 177.6 278 37.8
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 2.3e-42 176.8 289 39.4
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 3.1e-42 176.4 290 38.6
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 3.1e-42 176.4 276 40.6
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 3.1e-42 176.4 295 39.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 8.9e-42 174.9 301 38.5
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.2e-41 174.5 267 41.2
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.0e-41 173.7 286 37.8
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 3.4e-41 172.9 285 38.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 5.8e-41 172.2 275 38.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.2e-39 166.4 278 39.2
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 2.7e-38 163.3 282 36.9
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 6.0e-38 162.2 273 37.4
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.0e-37 161.4 152 51.3
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.5e-36 157.5 286 38.5
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-36 157.1 166 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 4.7e-35 152.5 280 33.6
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.2e-35 152.1 333 32.4
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.2e-34 149.1 151 47.7
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 8.9e-34 148.3 163 48.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.9e-32 142.5 113 54.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 4.9e-32 142.5 294 36.4
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 4.1e-31 139.4 244 37.7
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 7.1e-31 138.7 282 33.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 9.2e-31 138.3 306 34.0
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.9e-29 132.9 146 48.6
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.7e-27 125.9 108 53.7
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.7e-27 125.9 108 53.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 5.2e-26 122.5 276 30.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.8e-25 119.0 111 55.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.9e-24 116.7 275 34.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.8e-24 116.3 102 52.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 3.8e-24 116.3 283 33.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 4.2e-23 112.8 293 29.0
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.2e-23 112.8 307 32.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.2e-22 111.3 276 29.0
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.6e-22 110.9 282 32.3
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.7e-22 110.2 282 34.0
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 6.0e-22 109.0 294 32.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.3e-21 107.1 279 30.8
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.9e-21 106.3 91 53.8
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.1e-21 105.9 279 30.8
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.1e-21 105.9 279 31.2
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 6.6e-21 105.5 94 50.0
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.1e-20 104.8 210 33.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.3e-20 102.8 97 49.5
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 9.6e-20 101.7 293 26.6
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.6e-19 99.8 218 33.5
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.1e-18 96.7 164 38.4
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.4e-17 93.2 197 33.0
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.4e-15 87.0 292 27.1
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.0e-13 81.6 186 32.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 5.1e-13 79.3 152 38.8
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.6e-11 74.3 49 67.3
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 5.8e-09 65.9 120 38.3
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 5.5e-07 59.3 201 29.9
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.1e-07 58.9 139 31.7
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.1e-06 57.4 56 46.4


User provided reference genes

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