Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.7e-162 575.9 283 100.0
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-103 379.8 290 67.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 6.5e-93 344.7 290 61.0
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.5e-92 343.6 300 59.3
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 3.3e-92 342.4 291 60.5
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 5.5e-92 341.7 294 60.5
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.2e-91 340.5 291 60.8
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 4.0e-90 335.5 292 60.6
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.0e-89 333.2 289 61.6
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.4e-89 332.4 289 59.2
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 9.8e-89 330.9 278 60.4
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.7e-88 330.1 297 59.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.7e-88 330.1 293 59.0
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 2.8e-88 329.3 288 59.4
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 3.7e-88 328.9 286 58.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 8.3e-88 327.8 289 59.9
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 8.3e-88 327.8 291 59.8
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.1e-87 325.5 286 58.7
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.2e-86 323.9 294 57.1
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.0e-86 323.2 287 58.9
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 4.5e-86 322.0 287 58.5
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 7.8e-86 321.2 286 58.4
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.7e-85 320.1 288 58.0
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.9e-85 319.3 289 57.1
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.5e-84 317.0 306 55.9
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.9e-84 316.6 269 61.3
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.5e-84 316.2 289 56.4
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.6e-83 313.5 289 57.1
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.8e-83 312.8 293 55.6
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 3.6e-83 312.4 280 58.2
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 4.7e-83 312.0 319 53.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 4.7e-83 312.0 290 54.5
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 4.7e-83 312.0 294 55.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.0e-82 310.8 319 54.2
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.3e-82 309.7 294 55.1
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.2e-82 308.5 294 54.1
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.8e-82 308.1 297 54.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 6.4e-80 301.6 286 57.3
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.2e-78 297.4 293 54.3
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.6e-78 297.0 291 52.6
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 2.0e-78 296.6 291 51.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.7e-78 296.2 291 52.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.5e-78 295.8 291 53.3
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 7.8e-78 294.7 289 55.7
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.0e-77 294.3 291 51.9
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 3.9e-77 292.4 287 53.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 5.0e-77 292.0 295 51.2
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.5e-76 289.7 292 52.4
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.5e-76 289.7 278 57.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 4.3e-76 288.9 300 51.0
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 5.6e-76 288.5 293 52.2
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 4.7e-75 285.4 309 49.5
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 6.2e-75 285.0 269 57.6
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-74 284.3 291 51.2
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.8e-74 283.5 295 51.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.8e-74 283.5 288 52.1
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 8.9e-74 281.2 285 51.9
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-73 280.8 300 49.7
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.6e-73 279.6 288 53.1
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.4e-73 279.3 291 51.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 5.8e-73 278.5 286 51.4
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 7.5e-73 278.1 285 51.9
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 7.5e-73 278.1 287 50.2
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 9.8e-73 277.7 288 51.4
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 9.8e-73 277.7 290 53.1
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.3e-72 277.3 286 52.4
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 3.7e-72 275.8 282 54.3
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 4.9e-72 275.4 296 50.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 3.2e-71 272.7 308 47.7
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.2e-71 272.7 282 53.5
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.2e-71 272.7 283 51.9
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.2e-71 272.7 298 50.3
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.2e-70 270.8 283 51.9
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 7.8e-70 268.1 291 49.8
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.3e-69 266.5 288 50.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 6.6e-69 265.0 302 48.7
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.1e-68 264.2 290 50.3
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 9.5e-68 261.2 275 51.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 2.1e-67 260.0 289 49.5
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.1e-66 257.7 328 48.8
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.8e-66 256.9 218 60.6
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 4.0e-66 255.8 283 51.6
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 5.2e-66 255.4 278 50.4
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 6.4e-64 248.4 282 50.0
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.9e-63 246.9 344 41.3
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 3.2e-63 246.1 270 49.6
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.8e-58 230.3 287 49.8
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.5e-57 227.3 241 49.8
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.6e-57 224.9 165 67.9
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 7.6e-57 224.9 278 46.8
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.2e-56 223.4 296 45.3
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 8.4e-56 221.5 321 44.5
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 7.1e-55 218.4 303 44.9
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 7.1e-55 218.4 311 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.2e-54 217.6 297 43.8
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 7.8e-54 214.9 173 61.3
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.3e-53 214.2 297 42.8
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-52 210.7 288 42.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.1e-50 204.5 276 40.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 6.9e-50 201.8 255 43.9
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-49 201.1 171 56.7
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 8.4e-48 194.9 174 58.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.9e-47 193.7 282 41.5
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.3e-45 187.6 156 60.3
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 8.7e-45 184.9 280 41.4
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.3e-44 182.6 107 77.6
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.3e-44 182.6 107 77.6
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.3e-43 181.0 282 39.4
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.4e-42 177.6 181 52.5
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.4e-42 176.8 209 47.8
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.4e-42 176.8 277 39.4
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.6e-41 173.3 297 37.7
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.9e-40 169.1 274 38.3
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.9e-40 169.1 173 51.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 4.2e-39 166.0 93 81.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.7e-38 163.3 274 38.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 2.5e-36 156.8 92 81.5
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 5.6e-36 155.6 214 40.7
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 9.0e-34 148.3 289 38.1
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 3.4e-33 146.4 230 36.5
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 4.5e-33 146.0 197 45.7
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-32 142.1 94 68.1
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 6.4e-32 142.1 85 80.0
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.9e-31 140.6 118 60.2
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.4e-31 140.2 151 47.7
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 4.3e-28 129.4 203 39.9
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.4e-25 119.8 157 44.6
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 5.8e-25 119.0 157 44.6
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.4e-23 114.4 153 43.1
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.0e-22 109.0 84 63.1
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.4e-17 93.2 50 84.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.5e-12 77.0 104 41.3
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 3.3e-12 76.6 50 72.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.2e-11 73.9 36 91.7
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.9e-07 60.8 50 56.0
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 3.6e-06 56.6 62 50.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.6e-06 56.6 105 38.1
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 4.7e-06 56.2 60 51.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 6.1e-06 55.8 50 60.0


User provided reference genes

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