Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.3e-182 642.1 325 100.0
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.4e-133 478.4 326 74.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.3e-132 476.9 362 69.3
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 5.5e-128 461.5 327 72.8
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.7e-125 451.4 326 69.6
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.8e-118 429.9 327 66.7
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.7e-117 424.9 326 67.5
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.7e-114 414.5 326 67.2
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.3e-113 413.7 326 66.6
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.3e-110 402.9 346 60.4
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.8e-110 401.0 326 62.0
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.2e-109 400.6 328 62.8
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 9.8e-109 397.5 340 59.4
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.4e-107 393.7 326 61.0
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.5e-106 388.7 325 59.4
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 4.5e-106 388.7 326 60.4
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.3e-105 387.1 326 60.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.9e-105 386.0 326 59.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.1e-104 384.0 326 59.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.5e-104 383.6 325 62.5
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.3e-104 382.1 310 61.0
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-103 379.8 325 61.5
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.0e-102 377.5 326 60.1
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.0e-102 377.5 326 59.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 2.3e-102 376.3 326 59.8
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.0e-102 375.9 326 59.5
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.0e-102 375.9 327 59.6
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.0e-102 375.6 333 58.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.2e-101 374.0 325 61.5
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.2e-101 374.0 326 60.1
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.2e-101 374.0 326 58.3
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 2.0e-101 373.2 326 58.9
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.6e-101 372.9 326 60.1
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 5.7e-101 371.7 326 58.6
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 5.7e-101 371.7 328 58.2
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 5.7e-101 371.7 325 61.2
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.3e-100 370.5 326 58.3
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.9e-100 368.6 326 57.4
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 4.9e-100 368.6 330 57.0
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.4e-100 368.2 326 56.4
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.4e-99 367.1 326 57.7
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.4e-99 366.3 326 58.6
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 4.1e-99 365.5 329 57.8
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 5.4e-99 365.2 326 57.4
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.7e-98 362.8 326 57.1
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.7e-98 362.8 326 57.1
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.7e-98 362.8 326 56.1
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 5.9e-98 361.7 326 58.0
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 5.9e-98 361.7 382 51.3
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.3e-97 359.8 339 56.6
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.3e-97 359.8 326 55.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.3e-97 359.8 326 55.2
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 3.9e-97 359.0 366 51.9
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 6.6e-97 358.2 326 55.5
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 6.6e-97 358.2 395 49.1
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 8.6e-97 357.8 328 57.0
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-96 357.1 326 55.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.5e-96 356.3 327 56.3
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.5e-96 356.3 326 55.2
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.5e-96 356.3 326 59.5
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.3e-96 355.9 326 56.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 9.5e-96 354.4 325 56.3
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.6e-95 353.6 325 56.3
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.2e-95 351.7 325 55.7
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.8e-94 350.1 328 57.3
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.8e-94 350.1 326 57.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.1e-94 349.4 316 58.9
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 8.9e-94 347.8 327 56.9
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.2e-93 347.4 326 56.1
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.5e-93 347.1 308 58.8
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.0e-93 346.7 326 56.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.4e-93 345.9 326 55.5
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.7e-92 342.4 326 54.3
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 8.3e-92 341.3 327 55.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 8.3e-92 341.3 308 55.8
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.4e-91 340.5 326 54.6
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.9e-91 340.1 344 54.1
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 4.1e-91 339.0 326 53.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 5.4e-91 338.6 326 55.2
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.4e-91 338.6 326 53.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 5.4e-91 338.6 326 52.5
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 9.2e-91 337.8 326 54.3
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 9.2e-91 337.8 326 52.5
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.0e-90 336.7 327 54.1
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 7.8e-90 334.7 327 56.0
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.7e-89 333.6 326 53.4
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.1e-88 330.9 327 52.9
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 7.3e-88 328.2 326 53.1
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.6e-87 327.0 284 58.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.6e-87 327.0 327 52.9
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.6e-87 327.0 326 52.5
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-86 323.9 327 52.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-86 323.6 327 53.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.8e-86 323.6 327 53.5
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.3e-86 323.2 309 54.0
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 6.8e-86 321.6 336 51.8
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.5e-85 320.5 326 54.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.4e-85 318.9 335 50.7
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 7.5e-85 318.2 326 51.5
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.7e-84 317.0 367 48.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.1e-83 312.4 352 48.3
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 9.2e-83 311.2 331 48.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-82 310.8 326 51.5
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.6e-82 310.5 373 47.7
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.5e-82 309.3 269 58.7
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 6.0e-82 308.5 362 48.3
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.0e-77 293.5 251 57.8
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.2e-76 290.0 326 46.9
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.9e-76 289.7 287 55.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.4e-75 287.3 236 60.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 7.3e-72 275.0 326 47.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.6e-71 272.7 364 44.0
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.1e-70 269.6 326 45.4
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.1e-70 269.6 302 51.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.4e-67 260.8 216 59.7
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.6e-63 246.1 309 45.6
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 4.5e-61 239.2 211 58.3
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.7e-58 229.9 263 49.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.6e-58 229.2 295 46.1
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 3.0e-57 226.5 230 52.6
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.0e-57 226.5 327 43.7
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.9e-56 223.8 154 72.7
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.2e-55 218.8 329 43.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 6.9e-54 215.3 325 37.8
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.4e-53 213.0 326 42.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 9.9e-53 211.5 248 47.2
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.3e-52 211.1 173 63.0
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.9e-52 209.9 292 41.8
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.4e-46 191.0 166 57.8
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 2.4e-46 190.3 146 66.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.5e-44 182.2 171 55.6
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.9e-43 180.6 167 59.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 5.1e-41 172.6 146 63.0
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-36 158.3 249 39.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.7e-36 157.5 165 52.1
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.5e-35 153.7 153 49.0
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 7.2e-35 152.1 295 33.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 9.3e-35 151.8 314 33.8
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 8.7e-33 145.2 129 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 9.7e-32 141.7 209 34.4
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 6.9e-30 135.6 211 33.2
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 4.2e-27 126.3 120 53.3
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.3e-25 120.6 123 54.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.1e-22 111.7 308 28.6
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.6e-21 107.1 121 47.1
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 5.9e-21 105.9 83 61.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.4e-16 89.7 160 35.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 7.4e-16 89.0 95 51.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 9.1e-14 82.0 89 43.8
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.7e-13 79.0 87 52.9
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-12 76.3 77 50.6
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-11 75.1 77 50.6
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-11 75.1 77 50.6
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 7.2e-11 72.4 62 66.1
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.7e-10 70.5 63 49.2
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.1e-10 69.3 79 44.3
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 2.3e-09 67.4 56 60.7
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.3e-07 61.6 62 58.1
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 9.1e-06 55.5 65 47.7


User provided reference genes

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