Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1689.9 838 100.0
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1497.6 838 87.6
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1490.3 838 87.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1464.9 845 85.7
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1409.0 867 80.6
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1395.9 838 82.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1394.8 838 82.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1394.8 838 82.0
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1389.0 838 82.5
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1387.5 838 81.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1381.7 838 81.5
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1378.2 838 80.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 838 79.8
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1376.7 844 81.2
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1368.6 837 79.7
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 831 81.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 827 81.6
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1365.5 838 79.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1364.7 838 79.6
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1364.7 838 79.5
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1362.1 838 80.1
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1359.7 838 79.7
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1349.3 838 78.8
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 78.8
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 838 79.1
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1347.8 838 79.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1346.6 838 78.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1343.9 838 78.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 840 79.4
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1342.4 858 78.0
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1342.4 915 75.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 838 79.1
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 868 77.4
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 838 78.0
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1332.0 840 78.8
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 838 78.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1329.3 838 78.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 838 78.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 858 77.2
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 967 70.8
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 838 77.7
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 838 78.3
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 838 77.9
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 838 77.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1318.5 840 78.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 839 77.2
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 838 77.2
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 838 77.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1314.3 838 77.8
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 841 76.5
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 870 75.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 911 72.8
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 839 76.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 839 77.1
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1303.5 843 76.3
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 838 75.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 839 77.4
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 841 76.9
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 839 77.5
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 839 77.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 838 76.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 838 75.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 838 75.9
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 838 76.4
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1293.5 847 76.2
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 839 75.9
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 847 76.0
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 838 75.8
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1288.9 847 75.9
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1288.9 838 75.7
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 827 76.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1284.2 838 76.7
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 838 75.5
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 904 71.7
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 839 75.2
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 839 75.7
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 838 74.8
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1269.2 911 70.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1267.7 840 74.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1255.0 764 79.7
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1254.6 781 78.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 851 73.3
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1250.7 819 76.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1245.3 842 74.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1241.1 765 79.1
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1228.4 825 74.2
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1211.1 842 73.3
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1206.0 838 72.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1203.0 751 79.0
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1203.0 777 77.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 767 76.8
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1183.7 839 69.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1176.8 858 68.1
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 838 71.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1155.6 839 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 823 68.8
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1144.4 794 71.5
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1138.3 748 73.5
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1135.9 844 66.9
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1109.7 852 65.5
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1094.0 693 78.4
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1088.6 839 66.4
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1084.3 854 64.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 4.0e-311 1071.2 697 75.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 654 80.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.1e-309 1065.4 841 63.9
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.9e-289 999.2 845 64.4
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.3e-242 843.6 642 68.1
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 6.0e-235 818.1 542 73.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 7.3e-233 811.2 513 76.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 8.7e-202 708.0 418 83.5
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.8e-154 550.8 329 81.8
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.0e-117 428.7 300 75.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.9e-112 410.6 254 79.9
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.3e-108 397.1 307 64.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.4e-106 391.7 285 67.4
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.3e-93 348.6 263 66.5
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.1e-91 341.3 196 83.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.3e-82 310.1 388 47.9
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.7e-64 251.9 182 70.9
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.8e-64 250.8 275 53.8
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.0e-53 214.5 139 78.4
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-50 205.3 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 3.1e-50 204.5 117 86.3
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.4e-34 151.8 94 79.8
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 5.6e-31 140.6 83 79.5
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.2e-30 139.4 176 46.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 6.1e-30 137.1 82 82.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.0e-29 134.8 100 66.0
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-25 121.3 76 73.7
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 5.0e-24 117.5 73 79.5
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.2e-22 112.8 84 66.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.2e-18 98.2 67 70.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 3.5e-17 94.7 62 72.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.2e-12 79.7 105 47.6
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 3.2e-10 71.6 50 70.0
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-09 68.2 42 81.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-08 66.2 41 75.6


User provided reference genes

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