Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 0.0e+00 1298.1 810 100.0
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 4.5e-280 968.0 811 68.2
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 9.4e-278 960.3 815 67.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 4.1e-273 944.9 813 66.7
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.5e-270 935.6 854 65.2
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 4.7e-269 931.4 820 69.8
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.4e-265 919.1 816 66.7
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 4.2e-262 908.3 805 70.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 8.9e-260 900.6 811 65.2
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 8.9e-260 900.6 814 66.5
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-259 899.8 812 65.6
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.2e-258 896.0 836 67.5
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 8.3e-258 894.0 812 65.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.1e-257 893.6 804 61.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.4e-257 893.3 806 66.5
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 5.4e-257 891.3 806 64.8
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.7e-256 889.0 864 63.4
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.8e-256 887.5 815 66.3
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.3e-255 886.7 807 68.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.3e-255 885.9 806 63.4
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 5.0e-255 884.8 792 69.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 5.0e-255 884.8 840 65.0
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 4.3e-254 881.7 817 64.3
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.4e-252 876.7 805 60.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 1.8e-252 876.3 814 67.1
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.1e-252 875.5 839 71.4
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 2.0e-251 872.8 808 66.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 4.4e-251 871.7 826 63.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.7e-250 869.8 839 60.4
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 9.2e-249 864.0 828 60.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 6.0e-248 861.3 814 63.8
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.8e-248 860.9 811 63.1
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.7e-247 859.8 817 62.8
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 5.0e-247 858.2 837 61.5
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 6.6e-247 857.8 808 64.5
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 7.3e-246 854.4 818 62.3
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.6e-245 853.2 832 60.1
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.6e-245 853.2 828 63.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 6.2e-245 851.3 814 66.1
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.4e-244 850.1 833 62.1
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.8e-244 849.7 824 64.9
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.6e-243 845.9 824 65.4
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.8e-243 844.7 835 62.3
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.4e-241 839.3 796 63.2
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.2e-241 839.0 827 66.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 4.1e-241 838.6 810 61.0
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 7.1e-241 837.8 836 63.6
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 9.2e-241 837.4 821 63.9
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 9.2e-241 837.4 816 67.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.1e-240 836.3 810 65.1
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.7e-240 835.9 784 65.3
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.3e-239 833.6 822 63.1
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 3.3e-238 828.9 818 64.4
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.6e-238 828.2 821 65.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 4.7e-237 825.1 829 60.7
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 8.1e-237 824.3 823 62.3
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 5.2e-236 821.6 807 59.7
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.8e-235 818.1 826 61.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 3.7e-234 815.5 808 68.1
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.9e-233 813.1 825 61.9
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 7.1e-233 811.2 811 59.4
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.5e-232 808.9 835 58.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 6.0e-232 808.1 821 63.2
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.3e-231 807.0 835 58.2
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.7e-231 806.6 825 62.3
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 8.6e-231 804.3 821 59.9
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.0e-228 795.4 815 59.8
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.0e-228 795.4 824 60.2
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.7e-226 790.0 833 58.5
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 2.9e-226 789.3 829 58.1
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-225 786.9 830 56.7
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.4e-225 786.9 830 57.6
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 4.2e-225 785.4 817 62.3
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 3.5e-224 782.3 767 66.0
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.1e-222 777.3 803 56.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.5e-222 776.9 807 61.2
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.4e-220 769.6 825 59.3
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.2e-217 759.2 848 53.2
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 7.1e-217 758.1 813 56.5
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 7.9e-216 754.6 820 54.9
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 2.3e-215 753.1 693 72.7
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 2.1e-213 746.5 818 56.0
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 4.8e-213 745.3 828 55.2
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.8e-213 745.3 882 56.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 5.6e-206 721.8 780 55.6
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.3e-202 710.7 814 60.1
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 7.1e-201 704.9 812 57.6
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.3e-201 704.5 817 53.2
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 4.8e-197 692.2 815 56.9
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 8.2e-197 691.4 818 60.6
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 3.1e-196 689.5 816 58.3
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.1e-193 681.0 815 56.4
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.4e-193 680.6 813 57.4
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.1e-190 671.0 815 56.8
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.1e-190 671.0 812 57.5
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 4.3e-190 669.1 815 56.7
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 3.1e-188 662.9 649 63.5
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 5.0e-186 655.6 816 54.9
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 9.4e-185 651.4 795 51.4
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.6e-176 622.9 860 46.3
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.0e-175 619.8 819 51.3
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.9e-175 619.4 807 49.1
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.1e-174 617.8 904 49.0
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-171 607.8 806 47.5
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 7.7e-171 605.1 806 47.5
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.0e-170 604.7 806 47.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.5e-169 600.1 820 50.5
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 4.7e-168 595.9 636 64.9
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.1e-164 581.6 831 48.5
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 4.7e-160 569.3 820 46.2
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.7e-154 550.8 769 45.6
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 8.8e-151 538.5 539 68.1
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 4.1e-148 529.6 440 63.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 6.6e-138 495.7 705 49.5
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.1e-132 478.4 477 64.8
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.2e-131 474.9 643 49.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 6.2e-128 462.6 543 54.9
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.0e-126 457.6 744 45.8
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.3e-122 444.1 496 60.9
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.1e-119 435.3 885 43.3
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 6.4e-117 426.0 841 39.6
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.6e-114 415.6 518 57.3
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.1e-113 415.2 560 50.7
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.5e-113 414.1 423 66.4
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.2e-100 370.2 351 58.1
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-97 360.1 546 43.2
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.4e-95 354.4 309 60.2
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-93 348.6 245 71.8
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 1.3e-88 332.0 550 39.5
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.9e-85 320.9 522 47.1
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 8.4e-85 319.3 813 35.9
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.2e-83 315.5 892 35.1
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.5e-81 307.8 795 33.7
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 4.3e-81 307.0 445 43.4
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 6.9e-79 299.7 456 40.4
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.4e-58 232.3 203 64.5
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 9.7e-57 226.1 403 54.3
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 7.0e-55 219.9 358 51.1
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.5e-53 213.0 806 27.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.7e-48 198.7 134 73.9
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 3.5e-46 191.0 186 63.4
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-46 190.3 418 36.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-33 149.1 333 36.6
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-33 149.1 312 38.8
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.3e-32 146.0 137 56.2
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 4.4e-25 120.9 128 55.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 7.5e-25 120.2 136 52.9
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 8.3e-24 116.7 220 40.0
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.0e-22 112.1 102 62.7
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 2.3e-21 108.6 106 56.6
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.1e-20 106.3 96 59.4
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-20 105.9 129 51.2
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-20 105.1 142 46.5
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-17 95.9 86 58.1
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-17 95.5 133 45.9
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.3e-16 92.8 81 59.3
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-14 84.3 301 27.9
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.8e-14 83.6 357 30.5
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.8e-14 83.6 130 46.2
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-13 81.3 138 43.5
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-13 81.3 136 39.7
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.6e-13 80.1 309 29.8
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.1e-12 79.7 73 56.2
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.3e-12 77.8 75 57.3
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 7.3e-12 77.0 106 47.2
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-11 76.3 266 29.3
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 3.4e-09 68.2 51 70.6
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.5e-09 67.0 80 46.2
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.3e-08 66.2 52 69.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.2e-08 65.5 122 40.2
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 2.9e-08 65.1 82 46.3
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 2.9e-08 65.1 41 73.2
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 1.9e-07 62.4 100 42.0
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 3.2e-07 61.6 77 51.9
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 4.1e-07 61.2 65 52.3
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 1.2e-06 59.7 73 46.6
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 2.1e-06 58.9 124 37.1
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 6.0e-06 57.4 62 45.2
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.0e-06 57.4 154 35.7
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 7.8e-06 57.0 48 56.2


User provided reference genes

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