Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 1.2e-90 336.7 186 100.0
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 3.4e-66 255.4 189 74.1
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 1.7e-60 236.5 192 69.8
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 2.4e-59 232.6 176 73.3
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 2.0e-58 229.6 199 67.3
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 5.9e-58 228.0 190 73.2
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 3.8e-57 225.3 194 69.6
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 5.5e-56 221.5 196 68.9
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 6.1e-55 218.0 194 68.6
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 5.3e-51 204.9 184 65.8
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 5.3e-51 204.9 193 62.7
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 7.0e-51 204.5 182 64.8
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 3.5e-50 202.2 186 61.8
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 4.5e-50 201.8 188 61.7
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 7.7e-50 201.1 204 61.8
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 2.2e-49 199.5 196 60.2
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 1.1e-48 197.2 186 57.5
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 1.4e-48 196.8 190 62.1
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.4e-48 196.8 195 60.5
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.4e-48 196.8 195 60.5
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 1.9e-48 196.4 183 64.5
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 3.2e-48 195.7 186 60.8
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 5.5e-48 194.9 186 58.6
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 5.5e-48 194.9 192 61.5
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 1.2e-47 193.7 196 58.2
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 4.7e-47 191.8 127 75.6
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 1.0e-46 190.7 197 57.9
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 1.4e-46 190.3 182 59.3
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 5.2e-46 188.3 185 56.8
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 6.7e-46 188.0 188 61.7
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 1.5e-45 186.8 192 56.8
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 2.6e-45 186.0 195 59.5
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 9.7e-45 184.1 195 59.5
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 1.3e-44 183.7 199 59.3
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 2.2e-44 183.0 170 62.4
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 2.8e-44 182.6 165 62.4
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 2.8e-44 182.6 130 72.3
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 3.7e-44 182.2 116 79.3
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 3.7e-44 182.2 199 58.8
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 3.7e-44 182.2 186 58.1
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 4.8e-44 181.8 184 59.8
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 4.8e-44 181.8 181 58.0
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 4.8e-44 181.8 193 57.5
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 1.1e-43 180.6 180 63.9
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.4e-43 180.3 178 60.1
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 1.4e-43 180.3 178 62.9
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.4e-43 179.5 186 58.1
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 3.1e-43 179.1 186 56.5
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 7.0e-43 177.9 152 59.2
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 7.0e-43 177.9 188 55.9
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 9.1e-43 177.6 129 69.8
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 9.1e-43 177.6 186 57.5
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 1.2e-42 177.2 193 57.0
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 1.6e-42 176.8 129 69.0
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 2.0e-42 176.4 178 58.4
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 3.5e-42 175.6 190 60.0
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 4.5e-42 175.3 129 72.9
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 7.7e-42 174.5 193 57.0
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 1.7e-41 173.3 182 57.1
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 2.2e-41 172.9 180 55.6
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 2.9e-41 172.6 169 59.2
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 2.9e-41 172.6 126 71.4
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 5.0e-41 171.8 188 56.9
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 8.5e-41 171.0 173 58.4
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 1.1e-40 170.6 171 56.1
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 1.9e-40 169.9 180 54.4
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 3.2e-40 169.1 190 54.2
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 4.2e-40 168.7 183 53.0
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 4.2e-40 168.7 194 56.2
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 5.5e-40 168.3 181 56.4
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 5.5e-40 168.3 191 51.8
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 7.2e-40 167.9 129 65.9
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 1.6e-39 166.8 184 51.6
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 2.1e-39 166.4 190 57.4
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 2.7e-39 166.0 191 55.0
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 6.1e-39 164.9 174 54.0
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 1.4e-38 163.7 176 52.8
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 1.8e-38 163.3 152 54.6
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 1.8e-38 163.3 190 50.5
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 3.0e-38 162.5 188 51.1
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 3.0e-38 162.5 188 51.1
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 4.0e-38 162.2 176 52.8
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 4.0e-38 162.2 176 52.8
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 1.2e-37 160.6 185 54.6
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 2.6e-37 159.5 196 55.6
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 1.8e-35 153.3 194 47.9
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 7.0e-35 151.4 174 55.7
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.0e-34 149.8 178 55.1
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 5.9e-34 148.3 131 58.0
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 2.9e-33 146.0 89 76.4
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 5.0e-33 145.2 190 45.8
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 2.5e-32 142.9 187 46.5
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 3.2e-32 142.5 183 51.9
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 5.5e-32 141.7 109 64.2
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 4.7e-31 138.7 135 50.4
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 1.8e-30 136.7 159 58.5
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 1.8e-30 136.7 200 51.0
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 2.3e-30 136.3 187 52.9
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 8.3e-28 127.9 141 56.7
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 1.2e-26 124.0 129 48.8
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 2.8e-23 112.8 191 42.4
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 1.4e-22 110.5 139 54.7
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 2.6e-21 106.3 205 38.0
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 4.3e-16 89.0 129 41.9
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 1.2e-15 87.4 132 47.7
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 1.0e-14 84.3 114 43.9
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 5.8e-13 78.6 108 43.5
Lsat_1_v5_gn_4_144040 Lactuca sativa HOM05D018034 ORTHO05D019256 5.2e-06 55.5 73 50.7
Lsat_1_v5_gn_5_57621 Lactuca sativa HOM05D018034 ORTHO05D019256 5.2e-06 55.5 73 50.7


User provided reference genes

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