Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.3e-231 803.9 379 100.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.0e-166 589.3 372 74.2
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 3.0e-165 585.5 373 72.7
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.0e-157 558.1 372 71.8
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 5.6e-156 554.7 385 67.3
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.1e-151 540.4 375 67.5
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.0e-149 533.9 375 66.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.1e-148 530.4 376 66.5
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.8e-147 525.8 377 63.4
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.3e-144 516.9 377 62.3
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.7e-144 516.5 377 63.9
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.7e-144 516.5 378 63.0
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.1e-143 513.8 373 63.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.4e-143 513.5 377 62.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.9e-143 513.1 378 64.0
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 5.4e-143 511.5 377 63.4
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 6.0e-142 508.1 377 61.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 3.9e-141 505.4 374 62.6
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 8.6e-141 504.2 380 63.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 8.6e-141 504.2 377 62.3
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 4.3e-140 501.9 377 62.1
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.3e-140 501.9 374 62.8
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 5.6e-140 501.5 378 62.4
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 9.6e-140 500.7 376 63.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 9.6e-140 500.7 399 60.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.1e-139 499.6 377 62.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 6.2e-139 498.0 375 61.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 7.6e-137 491.1 383 61.4
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-135 486.5 382 60.5
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.2e-135 485.7 386 60.6
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 7.1e-135 484.6 375 61.1
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 7.1e-135 484.6 376 59.6
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.6e-134 483.4 382 59.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.1e-134 483.0 381 58.8
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.7e-134 482.6 382 60.5
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 6.0e-134 481.5 420 54.8
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.3e-133 480.3 378 60.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.3e-133 480.3 377 59.4
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.7e-133 479.9 377 59.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.7e-133 479.9 373 61.1
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.5e-132 476.9 382 60.2
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.9e-132 476.5 377 58.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.5e-132 476.1 399 57.9
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.5e-132 476.1 405 57.5
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 3.3e-132 475.7 377 58.1
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.3e-132 475.7 375 60.0
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.6e-132 474.9 379 59.9
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 7.3e-132 474.6 361 63.2
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 3.6e-131 472.2 384 58.3
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 6.2e-131 471.5 383 58.5
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 6.2e-131 471.5 376 59.3
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 8.1e-131 471.1 383 58.7
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.4e-130 469.5 405 56.5
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.4e-130 469.5 376 58.8
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 3.1e-130 469.2 467 50.5
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.5e-129 466.8 380 58.7
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 7.6e-129 464.5 374 58.3
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.4e-127 460.3 380 57.9
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.4e-127 460.3 380 57.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.4e-127 460.3 379 57.3
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.4e-127 460.3 377 58.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.1e-126 456.4 360 59.4
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 6.0e-126 454.9 377 56.0
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.3e-125 453.8 379 56.7
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 6.7e-125 451.4 379 57.5
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.9e-124 449.9 394 56.3
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.9e-124 449.9 345 60.9
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 5.6e-124 448.4 372 57.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.3e-123 447.2 376 55.1
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.8e-123 446.0 379 57.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 6.2e-123 444.9 378 55.3
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 9.0e-122 441.0 383 56.9
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 3.4e-121 439.1 347 60.8
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.8e-121 438.3 361 57.9
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 6.4e-120 434.9 373 53.4
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 8.4e-120 434.5 344 59.0
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 6.7e-117 424.9 334 59.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.9e-114 414.8 301 63.1
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.2e-113 414.1 347 58.5
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 2.2e-107 393.3 308 60.4
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.4e-106 390.6 375 49.3
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.6e-105 386.3 326 58.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.3e-104 384.0 351 53.0
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 1.4e-101 374.0 274 63.1
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.8e-101 373.6 397 49.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.3e-99 367.5 303 62.4
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.4e-98 364.0 379 49.1
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 6.7e-93 345.1 377 45.4
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.1e-92 344.4 283 58.0
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 4.8e-91 339.0 296 54.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.0e-89 333.6 246 62.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.2e-88 330.1 389 45.0
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 8.5e-88 328.2 393 45.0
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.5e-87 325.5 266 57.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 7.4e-84 315.1 375 42.9
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 7.0e-82 308.5 378 42.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.0e-76 290.4 352 41.5
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.2e-73 281.2 336 43.8
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 8.5e-72 275.0 376 39.9
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 9.1e-66 255.0 215 52.6
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.2e-45 186.0 298 34.2
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.3e-40 171.4 192 49.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 2.5e-39 167.2 119 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.3e-37 160.6 152 50.7
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.4e-34 151.4 369 31.2
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 4.6e-33 146.4 387 30.7
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.0e-32 145.2 364 28.3
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.0e-32 145.2 364 28.3
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.3e-32 144.1 367 28.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.0e-32 143.7 367 29.4
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 3.0e-32 143.7 367 28.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 5.1e-32 142.9 367 30.2
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 5.1e-32 142.9 365 29.9
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 6.6e-32 142.5 373 31.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 6.6e-32 142.5 374 31.0
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 8.6e-32 142.1 368 31.2
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.6e-32 142.1 390 27.9
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.1e-31 141.7 365 29.6
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.1e-31 141.7 367 31.1
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.1e-31 141.7 367 31.1
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.5e-31 141.4 365 28.8
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.5e-31 141.4 373 30.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 3.3e-31 140.2 391 30.4
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.3e-31 140.2 373 30.0
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 3.3e-31 140.2 391 31.7
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 4.3e-31 139.8 367 31.1
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 5.6e-31 139.4 368 29.3
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.6e-31 139.4 385 28.6
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 7.3e-31 139.0 376 29.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 7.3e-31 139.0 367 30.8
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 7.3e-31 139.0 363 31.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 7.3e-31 139.0 367 30.2
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 7.3e-31 139.0 371 30.5
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 9.5e-31 138.7 395 30.6
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 9.5e-31 138.7 367 30.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.2e-30 138.3 367 30.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.2e-30 138.3 367 30.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.1e-30 137.5 389 26.2
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.1e-30 137.5 183 43.7
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.7e-30 136.3 348 32.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.7e-30 136.3 367 30.5
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 6.2e-30 136.0 373 31.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 8.1e-30 135.6 368 31.2
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 8.1e-30 135.6 369 29.5
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.1e-29 135.2 363 30.6
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.1e-29 135.2 391 30.2
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.4e-29 134.8 390 30.0
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.4e-29 134.8 390 30.0
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.8e-29 134.4 363 30.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 2.4e-29 134.0 363 30.3
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 3.1e-29 133.7 363 30.0
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 4.0e-29 133.3 362 28.2
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 6.8e-29 132.5 363 30.0
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.4e-28 130.2 367 30.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 9.9e-28 128.6 366 30.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.9e-28 128.6 366 27.6
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.2e-27 127.5 363 29.5
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 6.4e-27 125.9 367 30.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.4e-26 124.8 349 28.9
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 2.4e-26 124.0 367 29.7
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 4.6e-25 119.8 369 27.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 7.8e-25 119.0 366 26.8
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 7.8e-25 119.0 364 29.7
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.5e-23 114.0 85 60.0
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.1e-21 108.6 132 45.5
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.8e-21 107.8 126 46.8
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.8e-21 107.8 130 43.1
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.4e-21 107.5 367 27.2
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 4.9e-19 99.8 245 30.2
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.2e-17 95.1 222 34.2
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 3.5e-17 93.6 84 51.2
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.0e-16 92.0 70 58.6
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 3.9e-16 90.1 70 58.6
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 5.1e-16 89.7 452 23.0
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 9.6e-15 85.5 63 58.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.6e-12 77.4 194 33.0
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.7e-11 74.7 118 38.1
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 6.4e-11 72.8 51 60.8
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.1e-10 72.0 71 49.3
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 6.7e-08 62.8 38 73.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.1e-07 62.0 207 26.6
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.5e-07 60.8 88 37.5
Cre02.g093401 Chlamydomonas reinhardtii HOM05D001404 ORTHO05D140787 9.6e-07 58.9 81 40.7


User provided reference genes

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