Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.9e-126 455.3 238 100.0
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 9.8e-58 227.6 210 64.8
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.6e-37 158.7 193 51.3
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 9.5e-37 157.9 193 51.3
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.6e-34 148.3 237 48.5
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.4e-32 143.3 197 49.7
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 9.0e-27 124.8 198 49.0
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.6e-23 114.0 194 47.4
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 7.8e-23 111.7 194 45.4
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.0e-22 111.3 194 44.8
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.0e-22 111.3 201 41.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.9e-22 109.4 185 47.0
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.5e-21 106.7 205 42.4
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.5e-21 106.7 204 41.2
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 7.3e-21 105.1 198 44.9
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.6e-20 104.0 198 39.9
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 2.1e-20 103.6 197 42.1
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.8e-20 102.4 206 40.3
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.8e-20 102.4 195 37.9
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 6.2e-20 102.1 197 41.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 8.1e-20 101.7 193 42.5
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 8.1e-20 101.7 194 42.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.1e-19 101.3 196 39.3
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.8e-19 100.5 207 41.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.8e-19 100.5 208 41.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.8e-19 100.5 208 41.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 3.1e-19 99.8 207 41.5
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 6.9e-19 98.6 206 39.3
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.0e-18 97.1 211 39.8
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.0e-18 97.1 199 41.7
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 2.0e-18 97.1 214 37.9
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.6e-18 96.7 198 41.9
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 3.4e-18 96.3 209 41.1
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 5.8e-18 95.5 197 41.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 7.6e-18 95.1 211 40.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.7e-17 94.0 201 39.8
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.2e-17 93.6 201 39.8
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 2.9e-17 93.2 199 41.2
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.9e-17 93.2 193 39.9
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.9e-17 93.2 194 39.7
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.8e-17 92.8 193 39.4
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.9e-17 92.4 212 37.7
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.9e-17 92.4 209 40.2
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.9e-17 92.4 193 39.9
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 6.4e-17 92.0 195 42.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 8.4e-17 91.7 192 41.7
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 1.1e-16 91.3 197 40.6
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 1.1e-16 91.3 207 38.6
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 2.4e-16 90.1 209 40.2
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 2.4e-16 90.1 196 42.3
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 4.2e-16 89.4 210 40.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.2e-16 89.4 204 38.7
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 5.4e-16 89.0 210 39.0
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 5.4e-16 89.0 210 39.0
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.4e-16 89.0 207 38.2
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 7.1e-16 88.6 202 36.1
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 7.1e-16 88.6 199 40.2
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-15 87.8 194 37.6
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-15 87.4 203 36.5
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.5e-15 86.3 161 44.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.6e-15 85.9 211 37.9
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.6e-15 85.9 211 37.9
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 4.6e-15 85.9 205 37.1
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 6.0e-15 85.5 212 39.2
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 6.0e-15 85.5 193 37.3
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 7.9e-15 85.1 209 35.9
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 7.9e-15 85.1 212 36.3
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.9e-15 85.1 199 36.2
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.3e-14 84.3 164 39.6
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.3e-14 84.3 194 37.1
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.3e-14 83.6 202 41.1
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-14 82.8 213 36.6
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 3.9e-14 82.8 213 36.6
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.9e-14 82.8 197 37.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 6.7e-14 82.0 209 37.8
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 6.7e-14 82.0 209 37.8
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 6.7e-14 82.0 204 37.3
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 8.7e-14 81.6 212 35.8
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 8.7e-14 81.6 212 35.8
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.1e-13 81.3 195 41.0
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-13 81.3 201 36.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.5e-13 80.9 194 38.1
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.5e-13 80.9 194 36.1
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.5e-13 80.9 194 34.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 2.5e-13 80.1 191 37.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.3e-13 79.7 196 38.3
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 4.3e-13 79.3 166 40.4
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.3e-13 79.3 210 37.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.3e-12 77.8 198 36.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-12 77.8 211 36.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.3e-12 77.8 207 37.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.3e-12 77.8 200 34.5
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.6e-12 77.4 72 59.7
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.6e-12 77.4 138 41.3
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 2.1e-12 77.0 193 38.9
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.1e-12 77.0 193 35.2
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.1e-12 77.0 141 43.3
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 4.8e-12 75.9 206 36.4
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 4.8e-12 75.9 206 36.4
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.8e-12 75.9 198 37.9
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.8e-12 75.9 148 41.9
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 8.1e-12 75.1 195 37.4
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-11 74.7 84 52.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.4e-11 74.3 135 40.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-11 73.9 209 34.9
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.8e-11 73.9 209 34.9
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-11 73.9 209 34.9
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.1e-11 73.2 73 56.2
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 3.1e-11 73.2 68 58.8
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 4.0e-11 72.8 190 36.3
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 5.3e-11 72.4 72 56.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 6.9e-11 72.0 76 55.3
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 9.0e-11 71.6 63 60.3
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 9.0e-11 71.6 207 34.8
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.5e-10 70.9 201 34.3
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.5e-10 70.9 171 38.0
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 3.4e-10 69.7 206 32.0
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.8e-10 68.9 102 42.2
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 5.8e-10 68.9 135 43.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 7.6e-10 68.6 145 38.6
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.0e-09 68.2 68 55.9
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.3e-09 67.8 207 33.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.7e-09 67.4 202 36.1
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.7e-09 67.4 202 36.1
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.2e-09 67.0 146 37.7
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.8e-09 66.2 139 39.6
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.8e-09 66.2 168 36.9
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 4.9e-09 65.9 97 40.2
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.4e-09 65.5 202 35.6
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.4e-09 65.5 202 35.6
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-08 64.7 213 31.9
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.1e-08 64.7 202 32.7
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.9e-08 63.9 188 34.0
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.5e-08 63.5 86 44.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 4.2e-08 62.8 198 33.8
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 7.1e-08 62.0 193 33.2
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 9.3e-08 61.6 102 41.2
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 9.3e-08 61.6 193 34.7
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.6e-07 60.8 211 33.6
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 4.6e-07 59.3 198 30.3


User provided reference genes

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