Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 6.5e-190 667.2 319 100.0
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.3e-161 573.2 317 85.2
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 6.8e-155 550.8 317 79.8
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.4e-145 517.7 318 76.4
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.7e-143 512.3 317 77.9
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.3e-142 510.0 321 75.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.7e-142 509.6 318 76.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.3e-142 509.2 318 75.2
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.1e-141 506.9 317 75.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.3e-141 505.0 317 74.8
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 7.3e-141 504.2 319 74.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 9.5e-141 503.8 317 75.7
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 8.9e-139 497.3 317 73.2
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.8e-138 494.6 317 73.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.8e-138 494.6 279 83.5
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.2e-137 492.7 317 73.8
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 8.3e-137 490.7 321 71.7
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.3e-137 490.7 317 73.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-136 490.3 320 72.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.4e-136 490.0 317 72.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-136 489.6 314 73.6
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 3.2e-136 488.8 318 72.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 5.4e-136 488.0 320 72.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.2e-135 486.9 320 72.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 1.2e-135 486.9 319 71.2
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.6e-135 486.5 320 72.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.6e-135 486.5 319 72.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 3.5e-135 485.3 317 72.9
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 4.6e-135 485.0 322 73.0
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 4.6e-135 485.0 315 71.7
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 4.6e-135 485.0 322 69.6
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.0e-135 484.6 317 71.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 7.8e-135 484.2 315 72.1
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.8e-135 484.2 316 71.8
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.0e-134 483.8 315 72.4
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.0e-134 483.8 317 71.6
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.7e-134 483.0 316 72.2
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.3e-134 482.6 317 71.6
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.0e-134 482.3 317 72.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.0e-134 482.3 317 72.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.9e-134 481.9 317 71.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 5.1e-134 481.5 332 68.1
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 6.6e-134 481.1 316 71.5
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.1e-133 480.3 319 71.5
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.9e-133 479.6 318 70.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.5e-133 479.2 317 69.4
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 7.3e-133 477.6 319 70.8
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 7.3e-133 477.6 316 70.9
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.2e-132 476.9 315 70.8
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.6e-132 476.5 369 64.2
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 3.6e-132 475.3 315 71.1
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 3.6e-132 475.3 315 71.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.6e-132 475.3 316 70.6
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.6e-132 475.3 316 71.8
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 6.2e-132 474.6 318 70.4
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 8.1e-132 474.2 315 70.5
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.1e-131 473.8 315 70.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-131 473.8 315 70.8
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-131 473.8 316 72.2
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.1e-131 473.8 317 70.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.4e-131 473.4 317 69.7
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.4e-131 473.4 317 68.8
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.4e-131 473.4 317 70.3
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.8e-131 473.0 315 71.1
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.8e-131 473.0 322 68.9
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.3e-131 472.6 317 68.8
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.3e-131 472.6 317 70.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.1e-131 472.2 304 73.7
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.1e-131 472.2 317 69.7
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 3.1e-131 472.2 316 69.9
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.0e-131 471.9 315 70.8
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 5.2e-131 471.5 315 70.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 5.2e-131 471.5 371 63.6
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 6.8e-131 471.1 315 70.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 8.9e-131 470.7 315 70.8
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.5e-130 469.9 319 70.8
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 3.4e-130 468.8 317 70.0
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 3.4e-130 468.8 316 69.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 4.4e-130 468.4 315 70.5
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 5.8e-130 468.0 315 70.2
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 7.6e-130 467.6 314 70.1
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 9.9e-130 467.2 316 68.4
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.2e-129 466.1 317 70.7
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.2e-129 466.1 318 70.1
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.9e-129 465.7 317 70.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.9e-129 465.7 339 65.2
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.7e-129 465.3 317 68.1
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.4e-129 464.5 317 68.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 8.3e-129 464.2 322 69.6
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 2.4e-128 462.6 321 70.7
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 3.2e-128 462.2 317 68.8
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 4.1e-128 461.8 319 68.7
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 9.2e-128 460.7 317 69.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.6e-127 459.9 318 68.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.5e-127 458.8 316 70.3
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 7.8e-127 457.6 316 67.1
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 7.8e-127 457.6 317 68.8
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 3.9e-126 455.3 318 68.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.1e-126 454.9 318 67.9
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.1e-125 453.8 318 67.9
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 4.3e-125 451.8 324 66.4
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.2e-124 450.3 321 66.7
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.6e-124 448.7 315 67.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 8.1e-124 447.6 318 67.3
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.4e-123 446.8 308 69.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.8e-123 446.4 319 65.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.1e-123 445.7 318 67.6
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.8e-123 444.5 318 67.3
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.6e-122 442.6 318 67.0
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.4e-122 441.8 316 68.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.4e-122 441.8 315 65.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-120 437.2 317 66.9
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 4.2e-120 435.3 315 66.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.6e-118 427.9 315 67.3
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.6e-117 424.9 294 66.0
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 9.6e-117 424.1 391 56.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.6e-116 422.2 316 63.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.3e-115 418.3 316 62.3
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.4e-114 415.6 317 65.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 4.4e-114 415.2 337 60.5
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.9e-112 409.8 320 63.1
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.7e-111 406.0 290 65.9
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.9e-111 404.4 317 62.1
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.6e-109 398.3 268 71.3
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.3e-108 397.1 326 60.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.8e-108 396.0 339 57.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.2e-106 390.6 291 66.7
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.7e-103 379.4 335 57.3
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.0e-102 375.9 317 59.0
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.5e-101 373.6 323 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 4.3e-101 372.1 317 56.5
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.1e-100 369.8 319 57.1
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.1e-99 367.5 323 57.0
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 9.3e-96 354.4 317 55.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.0e-94 349.4 226 73.9
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 2.5e-93 346.3 303 58.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 7.9e-87 324.7 292 56.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.9e-86 322.4 355 45.9
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 7.4e-85 318.2 244 64.8
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.3e-81 307.4 218 68.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 6.3e-76 288.5 201 69.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 5.0e-73 278.9 186 71.0
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.1e-71 271.9 184 71.2
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.2e-64 249.2 188 66.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.6e-61 240.0 307 49.2
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.3e-61 239.6 166 68.7
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.5e-58 229.2 152 72.4
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.5e-56 223.4 144 71.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 3.1e-51 206.5 146 70.5
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.7e-44 184.1 148 60.8
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.0e-38 163.3 133 62.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 4.4e-37 159.5 94 75.5
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.7e-36 157.5 124 59.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 5.9e-34 149.1 110 63.6
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 2.6e-29 133.7 69 84.1
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 4.4e-29 132.9 89 67.4
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 6.4e-28 129.0 75 72.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.9e-27 127.5 92 62.0
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.4e-27 127.1 102 63.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 5.0e-25 119.4 73 72.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.5e-24 117.9 90 61.1
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.8e-22 110.9 67 71.6
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.3e-20 104.8 146 45.9
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.7e-17 94.4 58 65.5
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.4e-14 84.7 73 57.5
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.1e-08 65.1 44 65.9
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.5e-08 63.9 81 48.1
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 9.6e-08 62.0 41 70.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 2.8e-07 60.5 51 54.9
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.8e-06 57.8 56 55.4


User provided reference genes

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