Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 3.0e-131 471.9 239 100.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.6e-106 389.0 229 83.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.7e-92 342.4 237 72.2
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.0e-91 340.5 247 73.3
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 5.2e-91 338.2 238 73.1
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.3e-89 333.6 234 73.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.1e-88 328.9 243 71.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 5.4e-88 328.2 238 71.8
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.9e-86 322.4 237 69.6
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.5e-85 320.1 237 68.8
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.9e-85 319.7 237 68.8
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 3.3e-85 318.9 237 68.4
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.2e-85 318.5 234 69.2
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.2e-85 318.5 233 70.4
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 2.1e-84 316.2 227 71.4
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.0e-83 312.4 188 83.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.0e-82 309.7 229 69.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.6e-82 309.3 229 69.4
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.5e-79 298.9 238 66.8
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.3e-78 297.0 230 67.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 5.0e-78 295.0 227 68.3
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.6e-78 294.3 230 65.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.9e-77 293.1 230 66.1
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 4.3e-77 292.0 229 65.1
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.2e-76 290.4 229 65.5
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.6e-76 288.9 229 65.1
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 4.7e-76 288.5 230 65.7
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 6.1e-76 288.1 233 64.8
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 8.0e-76 287.7 238 65.1
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.3e-75 286.2 229 65.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.3e-75 286.2 229 65.1
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.2e-75 285.0 196 71.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.9e-75 284.3 230 65.2
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 1.2e-74 283.9 233 63.5
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.6e-74 282.7 230 64.3
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 7.5e-74 281.2 232 65.5
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.7e-73 280.0 230 63.5
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.2e-73 279.6 230 63.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 3.7e-73 278.9 228 62.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.7e-73 278.9 229 62.9
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 4.9e-73 278.5 219 65.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.1e-72 277.3 215 67.0
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.1e-72 277.3 230 64.3
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.4e-72 276.2 230 63.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.2e-72 275.8 227 63.9
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 4.1e-72 275.4 229 65.1
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.1e-72 275.4 228 64.9
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 5.4e-72 275.0 233 64.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.2e-72 274.2 229 62.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 9.2e-72 274.2 233 64.8
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.6e-71 273.5 229 61.6
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.7e-71 272.7 227 62.6
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-71 272.7 229 62.4
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 4.6e-71 271.9 229 62.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 4.6e-71 271.9 229 62.9
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.0e-71 271.6 227 62.1
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 7.8e-71 271.2 229 62.4
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.3e-70 270.4 230 61.7
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.3e-70 270.4 234 59.8
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.3e-70 269.6 231 63.6
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.3e-70 269.6 233 63.9
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 2.3e-70 269.6 229 62.4
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 3.9e-70 268.9 234 59.8
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 6.6e-70 268.1 227 62.6
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.3e-69 265.4 227 62.1
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 5.6e-69 265.0 230 63.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.2e-68 263.8 248 56.5
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.2e-68 263.8 230 61.7
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-68 263.5 232 61.6
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.1e-68 263.1 202 67.3
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 3.6e-68 262.3 229 60.7
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.0e-68 261.2 205 64.9
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.0e-68 261.2 183 69.9
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.1e-67 259.2 231 61.5
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.0e-67 258.8 233 60.1
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-66 256.9 227 60.4
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.0e-66 256.5 257 55.3
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.0e-66 256.5 220 62.7
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.6e-66 256.1 232 59.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 2.6e-66 256.1 198 65.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.6e-66 256.1 231 57.6
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 5.8e-66 255.0 228 60.1
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 7.5e-66 254.6 260 52.7
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 7.5e-66 254.6 182 71.4
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.2e-65 253.1 232 58.2
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.9e-65 252.7 230 57.0
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 6.4e-65 251.5 221 62.4
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 6.4e-65 251.5 229 62.0
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 6.4e-65 251.5 194 64.9
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.1e-64 250.8 231 58.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.9e-64 250.0 224 60.3
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.2e-64 249.2 228 61.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 4.1e-64 248.8 201 62.7
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 5.4e-64 248.4 229 57.2
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 7.0e-64 248.1 229 61.6
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 9.2e-64 247.7 228 56.1
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-63 247.3 229 60.3
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-63 247.3 231 60.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.2e-63 247.3 231 60.2
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.2e-63 247.3 225 60.4
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.2e-63 247.3 176 70.5
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-63 246.9 228 59.2
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.6e-63 246.9 228 59.6
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.7e-63 246.1 232 59.9
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 3.5e-63 245.7 227 58.1
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 7.8e-63 244.6 226 59.7
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.0e-62 244.2 233 56.7
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.3e-62 243.8 225 58.2
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 6.6e-62 241.5 142 86.6
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 8.6e-62 241.1 226 59.3
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-61 240.4 231 58.4
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.5e-61 239.6 207 62.3
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 2.5e-61 239.6 229 59.0
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.5e-61 237.7 224 57.6
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 4.7e-60 235.3 199 62.8
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 4.7e-60 235.3 218 57.8
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-59 234.2 227 57.7
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.3e-59 233.0 231 53.2
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.9e-59 231.1 167 68.9
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-58 229.2 231 57.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 7.1e-56 221.5 250 51.6
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.6e-55 220.3 236 53.4
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.1e-55 219.9 231 50.6
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.5e-55 219.2 153 73.2
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.0e-55 218.4 229 53.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 6.0e-55 218.4 229 53.3
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.7e-54 216.9 213 55.4
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 6.6e-54 214.9 231 50.2
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 7.3e-53 211.5 186 59.7
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 2.1e-52 209.9 203 53.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.8e-50 201.8 223 51.6
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 8.4e-49 198.0 236 50.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.4e-48 195.3 152 67.1
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.2e-47 194.1 149 65.1
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.6e-44 183.7 227 48.0
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.9e-43 178.3 152 63.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.5e-42 177.2 202 52.0
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 2.2e-41 173.3 167 55.7
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 4.2e-40 169.1 109 76.1
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.6e-39 165.6 127 62.2
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.5e-37 160.6 98 81.6
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.3e-33 147.5 156 54.5
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 3.8e-33 146.0 101 73.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.2e-32 142.5 130 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.1e-31 140.2 133 57.9
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 9.6e-29 131.3 102 61.8
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 8.1e-28 128.3 102 63.7
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.0e-27 125.9 132 50.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.6e-23 114.0 81 71.6
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 5.1e-22 109.0 71 77.5
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 7.6e-18 95.1 64 75.0
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 4.9e-17 92.4 95 55.8
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 4.9e-17 92.4 95 55.8
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.6e-15 85.9 68 61.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 7.9e-15 85.1 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.3e-13 79.3 94 40.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 5.7e-13 79.0 118 37.3


User provided reference genes

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