Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.2e-102 377.5 380 100.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.5e-65 253.1 335 93.7
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.9e-64 250.0 335 93.7
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-64 249.2 335 93.4
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.8e-62 243.4 335 92.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 6.8e-61 238.8 335 90.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.7e-57 226.9 351 88.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 4.6e-57 226.1 326 91.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.0e-56 222.6 351 80.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-55 221.5 328 91.5
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-55 221.1 328 91.2
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.3e-55 219.5 331 90.6
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.6e-54 217.6 320 92.2
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.6e-54 217.6 329 90.9
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.8e-54 216.9 326 91.4
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.8e-54 216.9 328 91.2
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.8e-54 216.9 331 90.6
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.8e-54 216.9 331 90.6
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.6e-54 216.5 325 90.2
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 4.7e-54 216.1 331 87.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 8.0e-54 215.3 330 89.1
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.1e-53 214.9 328 90.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.8e-53 214.2 326 90.5
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.3e-53 213.8 327 89.9
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.1e-53 213.4 328 89.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 4.0e-53 213.0 325 89.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.8e-53 212.2 309 92.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.9e-53 211.8 325 90.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 8.9e-53 211.8 326 89.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.2e-52 211.5 328 89.3
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.2e-52 211.5 328 89.3
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.2e-52 211.5 309 92.6
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.2e-52 211.5 325 89.8
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.2e-52 211.5 309 92.6
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.2e-52 211.5 326 89.9
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.2e-52 211.5 328 89.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.2e-52 211.5 331 89.4
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.2e-52 211.5 330 90.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.2e-52 211.5 334 79.6
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.2e-52 211.5 325 88.9
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.5e-52 211.1 321 90.7
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.0e-52 210.7 327 85.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.6e-52 210.3 326 90.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.4e-52 209.9 330 89.1
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-52 209.9 309 92.6
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.4e-52 209.9 331 87.9
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.4e-52 209.9 336 87.2
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 4.4e-52 209.5 332 89.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 4.4e-52 209.5 333 88.9
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.4e-52 209.5 331 89.1
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.8e-52 209.1 310 93.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 5.8e-52 209.1 325 89.5
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 5.8e-52 209.1 320 91.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 5.8e-52 209.1 325 90.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 7.5e-52 208.8 325 88.9
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 7.5e-52 208.8 325 88.9
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.7e-51 207.6 324 88.9
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.7e-51 207.6 309 92.9
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.7e-51 207.6 328 90.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.2e-51 207.2 324 89.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.2e-51 207.2 325 89.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.7e-51 206.5 328 88.4
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.7e-51 206.5 309 90.6
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-51 206.5 309 90.3
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.9e-51 206.1 325 89.2
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.1e-50 204.9 313 92.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-50 204.9 309 91.9
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.4e-50 204.5 315 92.1
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.4e-50 203.8 318 90.9
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.4e-50 203.8 321 88.5
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.4e-50 203.8 328 88.1
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 5.4e-50 202.6 320 87.2
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.0e-50 202.2 319 90.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.2e-49 201.4 320 88.8
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.6e-49 201.1 331 87.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.1e-49 200.7 324 85.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.6e-49 199.5 331 87.3
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 6.0e-49 199.1 318 88.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.0e-49 199.1 309 91.6
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.8e-49 198.7 251 89.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.0e-48 198.4 344 77.6
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.7e-48 197.6 353 64.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.0e-48 196.8 329 86.9
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.9e-48 196.4 301 93.4
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.9e-48 196.4 319 89.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.9e-48 196.4 327 86.9
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 5.1e-48 196.1 320 88.8
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.1e-48 196.1 316 87.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.6e-48 195.3 323 75.5
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 8.6e-48 195.3 340 60.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 8.6e-48 195.3 320 86.6
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.1e-47 194.9 332 86.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-47 194.9 319 89.0
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.1e-47 194.9 308 90.9
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-47 194.9 327 88.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.5e-47 194.5 324 88.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.5e-47 194.5 306 91.2
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.5e-47 193.7 332 85.8
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-47 193.7 319 89.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.3e-47 193.4 319 88.7
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.3e-47 193.4 319 88.7
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.3e-47 193.0 257 87.5
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 5.6e-47 192.6 308 90.6
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 9.5e-47 191.8 370 65.9
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 9.5e-47 191.8 322 87.9
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.6e-46 191.0 246 87.0
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.8e-46 190.3 321 84.4
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 8.1e-46 188.7 321 88.2
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.1e-46 188.7 315 88.6
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 8.1e-46 188.7 331 84.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.1e-45 188.3 336 84.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.1e-45 188.3 321 88.2
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.8e-45 187.6 321 88.2
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-45 187.6 298 91.6
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 5.2e-45 186.0 254 86.2
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.6e-44 183.7 328 74.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.6e-44 183.7 334 85.6
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 4.4e-44 183.0 335 71.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.9e-42 177.6 326 85.9
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.9e-42 177.6 340 70.9
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.4e-42 177.2 326 84.0
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.4e-42 177.2 326 84.0
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 4.1e-42 176.4 251 67.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.1e-42 175.6 329 69.3
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.5e-41 173.3 309 80.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.5e-41 173.3 309 80.9
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.5e-41 173.3 315 87.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.0e-40 171.8 328 85.7
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.0e-40 171.8 342 80.7
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.0e-40 171.8 346 73.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.3e-40 171.4 315 85.4
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.0e-40 170.2 343 69.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.6e-40 169.1 225 91.1
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.5e-39 167.2 320 83.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.5e-39 167.2 315 86.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.3e-39 166.8 318 83.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 4.3e-39 166.4 327 85.6
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.8e-38 163.7 104 76.9
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.8e-38 163.7 107 76.6
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.8e-38 163.7 316 86.1
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.6e-38 163.3 318 82.1
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.2e-38 162.5 318 84.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.8e-37 161.0 96 79.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.8e-37 161.0 96 79.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.0e-37 159.8 104 75.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.9e-37 158.7 104 75.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 8.9e-37 158.7 104 76.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 4.4e-36 156.4 241 82.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.2e-34 150.2 109 71.6
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.2e-34 150.2 97 75.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.2e-34 149.8 108 70.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-33 148.3 99 74.7
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-33 148.3 99 74.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 7.8e-33 145.6 249 78.3
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.7e-32 144.4 99 71.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 3.9e-32 143.3 86 79.1
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.8e-29 134.4 306 78.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 3.4e-28 130.2 321 76.0
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.9e-27 126.3 75 81.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.4e-27 125.6 93 63.4
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.3e-23 113.2 280 79.3
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.4e-18 96.3 64 62.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.3e-18 95.5 120 90.0
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.6e-17 94.7 67 67.2
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 7.9e-17 92.4 64 60.9
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.3e-16 91.7 247 71.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.3e-16 90.9 78 61.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 6.7e-16 89.4 120 54.2
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-15 87.0 255 87.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 9.6e-15 85.5 52 75.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.4e-13 80.9 80 53.8
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.3e-13 79.7 46 80.4
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.8e-12 76.3 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.9e-10 71.2 41 82.9
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.6e-09 68.2 41 80.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.8e-08 64.7 50 68.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.3e-08 64.3 35 88.6
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.5e-07 61.6 28 96.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.9e-07 61.2 35 82.9
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 6.2e-06 56.2 31 80.6


User provided reference genes

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