Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 7.1e-69 263.8 136 100.0
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 1.2e-15 87.0 153 38.6
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.4e-15 85.5 110 48.2
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.8e-14 82.0 156 38.5
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.0e-14 81.6 60 65.0
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 7.2e-13 77.8 98 45.9
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.2e-12 77.0 157 38.9
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 6.1e-12 74.7 154 35.7
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.0e-11 73.9 107 43.9
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 2.3e-11 72.8 95 46.3
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.0e-11 72.4 102 44.1
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 3.9e-11 72.0 93 47.3
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 6.7e-11 71.2 158 34.2
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 8.8e-11 70.9 156 36.5
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 8.8e-11 70.9 73 52.1
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-10 70.5 80 53.8
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 1.5e-10 70.1 158 33.5
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.0e-10 69.7 84 50.0
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 3.3e-10 68.9 125 35.2
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 4.4e-10 68.6 76 48.7
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 4.4e-10 68.6 79 50.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 5.7e-10 68.2 102 45.1
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 5.7e-10 68.2 151 35.1
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 5.7e-10 68.2 152 32.9
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.7e-10 68.2 163 32.5
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.4e-10 67.8 160 33.8
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 7.4e-10 67.8 73 46.6
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 9.7e-10 67.4 83 48.2
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.3e-09 67.0 77 48.1
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.3e-09 67.0 152 33.6
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.7e-09 66.6 78 46.2
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.7e-09 66.6 78 46.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.7e-09 66.6 78 46.2
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 1.7e-09 66.6 120 36.7
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 2.2e-09 66.2 154 33.8
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 2.2e-09 66.2 123 37.4
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 2.8e-09 65.9 158 33.5
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 2.8e-09 65.9 152 35.5
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.8e-09 65.9 152 34.9
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 3.7e-09 65.5 77 46.8
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.8e-09 65.1 99 43.4
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 4.8e-09 65.1 60 58.3
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 6.3e-09 64.7 70 52.9
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 6.3e-09 64.7 80 46.2
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 6.3e-09 64.7 116 38.8
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 8.2e-09 64.3 144 30.6
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 8.2e-09 64.3 71 50.7
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 8.2e-09 64.3 71 50.7
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 8.2e-09 64.3 73 54.8
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.1e-08 63.9 72 50.0
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.1e-08 63.9 78 44.9
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.1e-08 63.9 95 41.1
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 1.1e-08 63.9 75 49.3
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.1e-08 63.9 157 28.7
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 1.1e-08 63.9 99 44.4
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.4e-08 63.5 129 37.2
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.4e-08 63.5 92 44.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.4e-08 63.5 137 35.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.4e-08 63.5 150 36.7
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.8e-08 63.2 129 34.9
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.8e-08 63.2 104 42.3
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.8e-08 63.2 75 49.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.8e-08 63.2 68 50.0
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.4e-08 62.8 60 53.3
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.4e-08 62.8 116 37.1
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 3.1e-08 62.4 60 58.3
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 3.1e-08 62.4 61 55.7
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 4.1e-08 62.0 116 37.1
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 4.1e-08 62.0 94 42.6
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 4.1e-08 62.0 72 47.2
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 4.1e-08 62.0 88 43.2
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 5.3e-08 61.6 77 46.8
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.3e-08 61.6 99 43.4
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.3e-08 61.6 94 39.4
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 7.0e-08 61.2 70 48.6
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 7.0e-08 61.2 121 37.2
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 7.0e-08 61.2 87 43.7
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 7.0e-08 61.2 77 49.4
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 9.1e-08 60.8 102 41.2
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 9.1e-08 60.8 135 33.3
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.2e-07 60.5 67 55.2
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 1.2e-07 60.5 87 40.2
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.5e-07 60.1 67 52.2
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.5e-07 60.1 106 40.6
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.5e-07 60.1 70 47.1
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 1.5e-07 60.1 72 47.2
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.5e-07 60.1 150 30.7
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.5e-07 60.1 123 35.0
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 2.0e-07 59.7 125 40.0
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 2.0e-07 59.7 58 51.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.0e-07 59.7 58 58.6
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 2.0e-07 59.7 57 57.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.0e-07 59.7 92 42.4
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.4e-07 58.9 74 44.6
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 3.4e-07 58.9 79 45.6
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 4.5e-07 58.5 66 54.5
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.5e-07 58.5 70 47.1
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 5.9e-07 58.2 122 33.6
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 5.9e-07 58.2 113 36.3
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 5.9e-07 58.2 82 41.5
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 5.9e-07 58.2 123 34.1
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.9e-07 58.2 58 56.9
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 7.7e-07 57.8 99 38.4
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 7.7e-07 57.8 98 38.8
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.0e-06 57.4 67 50.7
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.0e-06 57.4 109 34.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.0e-06 57.4 62 48.4
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.3e-06 57.0 143 32.2
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 1.3e-06 57.0 138 30.4
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.3e-06 57.0 66 51.5
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.7e-06 56.6 60 50.0
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.7e-06 56.6 80 43.8
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.7e-06 56.6 118 34.7
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.7e-06 56.6 57 54.4
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 2.2e-06 56.2 115 30.4
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 2.2e-06 56.2 70 44.3
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.9e-06 55.8 60 51.7
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 3.8e-06 55.5 115 30.4
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 3.8e-06 55.5 123 30.9
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 5.0e-06 55.1 115 30.4
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 5.0e-06 55.1 115 31.3
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 5.0e-06 55.1 63 41.3
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 5.0e-06 55.1 82 43.9
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 5.0e-06 55.1 66 51.5
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 6.5e-06 54.7 60 53.3
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 6.5e-06 54.7 72 43.1
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 8.5e-06 54.3 131 30.5
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 8.5e-06 54.3 160 30.0


User provided reference genes

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