Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.6e-142 509.6 293 100.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 5.3e-53 212.2 327 47.1
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.8e-43 179.5 319 46.4
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 8.4e-43 178.3 314 48.1
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.5e-41 172.9 318 41.2
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 6.7e-40 168.7 321 47.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-39 167.9 317 49.8
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-39 167.2 318 48.4
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.3e-39 166.4 306 50.7
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 3.3e-39 166.4 319 48.0
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 4.3e-39 166.0 316 48.7
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-38 163.7 322 47.5
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.8e-38 163.3 321 48.9
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 4.8e-38 162.5 322 48.1
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.1e-37 161.4 316 47.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 6.9e-37 158.7 321 47.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.2e-36 157.9 326 45.1
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.5e-36 157.5 324 48.8
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-36 157.5 321 47.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.5e-36 157.5 321 47.4
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 3.4e-36 156.4 295 47.1
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 3.4e-36 156.4 295 47.1
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.0e-35 154.8 326 45.4
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-35 154.5 321 47.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.4e-34 151.0 318 46.5
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.4e-34 151.0 271 47.2
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.6e-33 147.5 334 44.0
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.1e-33 147.1 327 38.8
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 4.6e-33 146.0 329 45.9
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.6e-33 146.0 303 48.2
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.3e-32 144.4 328 46.3
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.8e-32 144.1 316 44.9
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.7e-32 142.1 273 52.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.1e-31 141.4 288 46.9
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.9e-31 140.6 315 45.1
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.9e-31 140.6 337 42.1
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.9e-31 140.6 317 45.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.3e-31 139.4 324 45.4
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.3e-31 139.4 317 43.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.7e-30 136.3 302 45.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 3.7e-30 136.3 329 45.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.4e-29 134.4 325 43.7
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.8e-29 134.0 293 47.1
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 4.0e-29 132.9 311 45.7
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.9e-29 132.1 280 47.5
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.2e-28 131.3 312 46.5
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.0e-28 130.6 297 45.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.6e-28 130.2 316 46.8
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 4.5e-28 129.4 334 42.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.0e-27 128.3 304 41.4
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-27 127.9 305 37.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.7e-27 127.5 294 44.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.2e-27 127.1 302 41.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.4e-26 124.4 303 39.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 5.5e-26 122.5 342 40.6
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 7.1e-26 122.1 328 42.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 9.3e-26 121.7 322 33.5
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.2e-25 121.3 318 35.8
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.6e-25 120.9 324 42.3
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.7e-25 120.2 321 43.9
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.7e-25 120.2 301 35.5
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 7.9e-25 118.6 321 38.6
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 7.9e-25 118.6 302 43.7
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.8e-24 117.5 338 37.6
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.8e-24 117.5 356 40.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.3e-24 117.1 309 43.7
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.3e-24 117.1 309 43.7
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.1e-24 115.9 286 46.2
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.7e-24 115.5 307 43.6
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 6.7e-24 115.5 265 35.5
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.7e-24 115.2 306 43.5
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 2.5e-23 113.6 306 42.8
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.5e-23 113.6 344 40.4
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.5e-23 113.6 319 42.9
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-23 113.2 291 43.3
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.3e-23 112.8 308 43.2
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.7e-23 112.5 348 39.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.7e-23 112.5 294 44.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 9.7e-23 111.7 298 43.3
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 9.7e-23 111.7 298 43.3
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.2e-22 110.5 321 35.2
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 2.2e-22 110.5 321 32.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.8e-22 109.4 320 39.7
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.1e-21 108.2 235 38.7
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.1e-21 106.7 300 33.0
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 4.1e-21 106.3 326 36.2
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.9e-21 105.5 315 42.9
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 3.4e-20 103.2 325 34.5
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 5.9e-20 102.4 340 31.8
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 7.7e-20 102.1 343 31.8
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.3e-19 101.3 319 34.2
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.7e-19 100.9 306 37.3
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.2e-19 100.5 217 50.7
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.1e-18 98.2 354 37.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.2e-18 96.3 290 33.1
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.5e-18 95.9 332 30.4
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.2e-18 95.5 328 35.7
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.4e-18 95.1 299 40.5
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.4e-18 95.1 330 30.9
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.6e-17 94.4 353 38.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.6e-17 94.4 334 31.7
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.1e-17 94.0 279 31.5
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 2.1e-17 94.0 229 46.7
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 4.6e-17 92.8 323 34.4
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 6.1e-17 92.4 372 37.9
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.1e-17 92.4 288 31.6
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-16 91.7 204 51.5
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.0e-16 91.7 165 46.7
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.0e-16 91.7 234 47.4
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.5e-15 87.0 304 32.9
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 7.4e-15 85.5 294 34.4
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-14 83.2 317 32.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-14 83.2 317 32.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-14 83.2 317 32.8
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.8e-14 82.8 287 39.4
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.8e-13 80.9 141 42.6
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 2.4e-13 80.5 328 31.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 6.9e-13 79.0 280 32.5
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.0e-12 77.4 306 31.7
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 3.4e-12 76.6 344 38.1
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 7.7e-12 75.5 292 36.6
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-11 73.9 329 31.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.8e-11 73.2 312 31.4
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 5.0e-11 72.8 335 29.3
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 6.5e-11 72.4 327 30.3
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 4.2e-10 69.7 331 30.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 7.2e-10 68.9 305 38.0
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-09 67.8 328 29.9
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-09 67.4 344 28.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-09 67.4 331 30.8
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.1e-09 67.4 331 30.8
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.7e-09 67.0 331 30.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 3.6e-09 66.6 328 29.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 4.7e-09 66.2 337 30.0
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 6.1e-09 65.9 329 29.8
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 7.9e-09 65.5 329 29.2
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-08 63.5 329 29.2
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.9e-08 63.2 319 34.8
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 2.0e-07 60.8 334 28.1
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.0e-07 60.8 396 32.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.3e-06 58.2 337 27.6
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.7e-06 57.8 116 37.1
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.8e-06 57.0 112 38.4
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 8.2e-06 55.5 279 38.0


User provided reference genes

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